Transcription Factor
| Accessions: | T00356 (AthalianaCistrome v4_May2016), Q9SRZ8 (JASPAR 2024) |
| Names: | ANAC028, AT1G65910, T00356;, F12P19.8 protein, NAC domain containing protein 28, Q9SRZ8_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 631 |
| Pfam Domains: | 6-134 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MAPVSMPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSK 60 61 DLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVYYRGRAPH 120 121 GSRTDWVMHEYRLEEQECDSKSGIQDAYALCRVFKKSALANKIEEQHHGTKKNKGTTNSE 180 181 QSTSSTCLYSDGMYENLENSGYPVSPETGGLTQLGNNSSSDMETIENKWSQFMSHDTSFN 240 241 FPPQSQYGTISYPPSKVDIALECARLQNRMLPPVPPLYVEGLTHNEYFGNNVANDTDEML 300 301 SKIIALAQASHEPRNSLDSWDGGSASGNFHGDFNYSGEKVSCLEANVEAVDMQEHHVNFK 360 361 EERLVENLRWVGVSSKELEKSFVEEHSTVIPIEDIWRYHNDNQEQEHHDQDGMDVNNNNG 420 421 DVDDAFTLEFSENEHNENLLDKNDHETTSSSCFEVVKKVEVSHGLFVTTRQVTNTFFQQI 480 481 VPSQTVIVYINPTDGNECCHSMTSKEEVHVRKKINPRINGVSSTVLGQWRKFAHVIGFIP 540 541 MLLLMRCVHRGNSNKNRGSEGYSRQPTRGDCNNRGTILMMENAVVRRKIWKKKKEKNMVD 600 601 EQGFRFQDSFVLKKLGLSLAIILAVSTISLI |
| Interface Residues: | 74, 79, 81, 90, 92, 94, 114, 118, 119, 120, 123 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0655 CTTstkyydCAmGywA MA1427.1 rTTGCGTrt MA1427.2 / UN0344.1 haCAAGTAAtcww MA1427.3 CAAGTAA |
| Binding Sites: | MA1427.2.1 / UN0344.1.1 MA1427.2.4 / UN0344.1.10 MA1427.2.5 / UN0344.1.11 UN0344.1.12 MA1427.2.6 / UN0344.1.13 UN0344.1.14 UN0344.1.15 UN0344.1.16 MA1427.2.8 / UN0344.1.17 UN0344.1.18 UN0344.1.19 MA1427.2.2 / UN0344.1.2 MA1427.2.10 / UN0344.1.20 UN0344.1.3 UN0344.1.4 UN0344.1.5 UN0344.1.6 UN0344.1.7 UN0344.1.8 UN0344.1.9 MA1427.2.11 MA1427.2.12 MA1427.2.13 MA1427.2.14 MA1427.2.15 MA1427.2.16 MA1427.2.17 MA1427.2.18 MA1427.2.19 MA1427.2.20 MA1427.2.3 MA1427.2.7 MA1427.2.9 MA1427.3.1 MA1427.3.10 / MA1427.3.16 MA1427.3.11 / MA1427.3.15 MA1427.3.12 / MA1427.3.13 / MA1427.3.18 / MA1427.3.20 / MA1427.3.4 / MA1427.3.5 MA1427.3.14 MA1427.3.17 MA1427.3.19 / MA1427.3.8 MA1427.3.2 MA1427.3.3 MA1427.3.6 MA1427.3.7 MA1427.3.9 |
| Publications: | O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
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