Transcription Factor
Accessions: | T061557_1.02 (CISBP 1.02), P33748 (JASPAR 2024) |
Names: | MSN2, T061557_1.02;, MSN2_YEAST, Multicopy suppressor of SNF1 protein 2, Zinc finger protein MSN2 |
Organisms: | Saccharomyces cerevisiae |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:C2H2 ZF |
Length: | 704 |
Pfam Domains: | 647-670 Zinc finger, C2H2 type 647-670 C2H2-type zinc finger 661-687 Zinc-finger double domain 676-698 Zinc finger, C2H2 type 676-698 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 MTVDHDFNSEDILFPIESMSSIQYVENNNPNNINNDVIPYSLDIKNTVLDSADLNDIQNQ 60 61 ETSLNLGLPPLSFDSPLPVTETIPSTTDNSLHLKADSNKNRDARTIENDSEIKSTNNASG 120 121 SGANQYTTLTSPYPMNDILYNMNNPLQSPSPSSVPQNPTINPPINTASNETNLSPQTSNG 180 181 NETLISPRAQQHTSIKDNRLSLPNGANSNLFIDTNPNNLNEKLRNQLNSDTNSYSNSISN 240 241 SNSNSTGNLNSSYFNSLNIDSMLDDYVSSDLLLNDDDDDTNLSRRRFSDVITNQFPSMTN 300 301 SRNSISHSLDLWNHPKINPSNRNTNLNITTNSTSSSNASPNTTTMNANADSNIAGNPKNN 360 361 DATIDNELTQILNEYNMNFNDNLGTSTSGKNKSACPSSFDANAMTKINPSQQLQQQLNRV 420 421 QHKQLTSSHNNSSTNMKSFNSDLYSRRQRASLPIIDDSLSYDLVNKQDEDPKNDMLPNSN 480 481 LSSSQQFIKPSMILSDNASVIAKVATTGLSNDMPFLTEEGEQNANSTPNFDLSITQMNMA 540 541 PLSPASSSSTSLATNHFYHHFPQQGHHTMNSKIGSSLRRRKSAVPLMGTVPLTNQQNNIS 600 601 SSSVNSTGNGAGVTKERRPSYRRKSMTPSRRSSVVIESTKELEEKPFHCHICPKSFKRSE 660 661 HLKRHVRSVHSNERPFACHICDKKFSRSDNLSQHIKTHKKHGDI |
Interface Residues: | 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 642, 647, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 686, 687, 688, 689, 690, 691, 692, 693, 694, 697 |
3D-footprint Homologues: | 2i13_A, 7eyi_G, 5ei9_F, 5yel_A, 4x9j_A, 2jpa_A, 2kmk_A, 8gn3_A, 1g2f_F, 8cuc_F, 7y3l_A, 3uk3_C, 5und_A, 8h9h_G, 1f2i_J, 7txc_E, 6blw_A, 5k5l_F, 2lt7_A, 7ysf_A, 6wmi_A, 5v3j_F, 5kkq_D, 2wbs_A, 1ubd_C, 8ssu_A, 1llm_D, 6ml4_A, 5kl3_A, 2drp_D, 7n5w_A, 5k5i_A, 1mey_C, 6u9q_A, 4m9v_C, 2gli_A, 8ssq_A, 7w1m_H, 6e94_A, 7y3m_I, 1tf6_A, 5yj3_D |
Binding Motifs: | M0533_1.02 mAGGGGta MA0341.1 rGGGG |
Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.