Transcription Factor

Accessions: T02755 (AthalianaCistrome v4_May2016), O81913 (JASPAR 2024)
Names: ANAC004, AT1G02230, T02755;, NAC domain-containing protein 4, NAC4_ARATH
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC
Length: 359
Pfam Domains: 4-132 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60
61 GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120
121 SKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVNSSG 180
181 GSEGSSFHSQELQNSSQSGVFANVQGESQIDDATTPIEEEWKTWLNNDGDEQRNIMFMQD 240
241 HRSDYTPLKSLTGVFSDDSSDDNDSDLISPKTNSIGTSSTCASFASSNHQIDQTQHSPDS 300
301 TVQLVSLTQEVSQGPGQVTVIREHKLGEESVKKKRASFVYRMIHRLVKKIHQCYSISRT
Interface Residues: 73, 78, 80, 83, 89, 91, 93, 94, 117, 118, 119, 122, 147, 148, 149
3D-footprint Homologues: 7xp3_B, 3swp_A, 6en1_A
Binding Motifs: M0654 wrCTTsYtywryAAGywwsmt
M0664 CTTsYtywryAAGt
UN0369.1 dwTgCTTaTwwrAgAAGTTtcwww
MA2043.1 wrCAAGAAAym
MA2043.2 CAAGAAA
Binding Sites: MA2043.2.8
MA2043.1.6
MA2043.1.7
MA2043.1.4
MA2043.1.5
MA2043.1.3
MA2043.1.1
MA2043.1.2
UN0369.1.1
UN0369.1.10
UN0369.1.11
UN0369.1.12
UN0369.1.13
UN0369.1.14
UN0369.1.15
UN0369.1.16
UN0369.1.17
UN0369.1.18
UN0369.1.19
UN0369.1.2
UN0369.1.20
UN0369.1.3
UN0369.1.4
UN0369.1.5
UN0369.1.6
UN0369.1.7
UN0369.1.8
UN0369.1.9
MA2043.1.10 / MA2043.1.16
MA2043.1.17
MA2043.1.11
MA2043.1.12
MA2043.1.13
MA2043.1.14
MA2043.1.15
MA2043.1.18
MA2043.1.19
MA2043.1.20
MA2043.1.8
MA2043.1.9
MA2043.2.17 / MA2043.2.4 / MA2043.2.5 / MA2043.2.7
MA2043.2.10 / MA2043.2.15 / MA2043.2.16 / MA2043.2.20 / MA2043.2.6
MA2043.2.11 / MA2043.2.12 / MA2043.2.13 / MA2043.2.14 / MA2043.2.18 / MA2043.2.19 / MA2043.2.2 / MA2043.2.3 / MA2043.2.9
MA2043.2.1
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.