Transcription Factor
| Accessions: | Q9ZQ85 (JASPAR 2024), T08730 (AthalianaCistrome v4_May2016) |
| Names: | EFM_ARATH, Myb family transcription factor EFM, MYB-domain transcription factor HHO4, Protein EARLY FLOWERING MYB, Protein HRS1 HOMOLOG 4, At2g03500, T08730; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 432 |
| Pfam Domains: | 235-286 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MASSSELSLDCKPQSYSMLLKSFGDNFQSDPTTHKLEDLLSRLEQERLKIDAFKRELPLC 60 61 MQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRNQPEKTNNKGSNWMTTAQ 120 121 LWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSKEQSLPELALS 180 181 TEVKRVSPTNEHTNGQDGNDESMINNDNNYNNNNNNNSNSNGVSSTTSQSNRKARRCWSP 240 241 DLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTSG 300 301 GPGPHLVVLGGIWVPPEYTSAHGGTPTLYHHQVHHHHTNTAGPPPPHFCSSQEFYTTPPP 360 361 PQPLHHHHFQTFNGSSGGTASTDSTHHQVTDSPTVEGKSPESGGGERKGLAALREECEDH 420 421 SNINGSEITLKF |
| Interface Residues: | 235, 275, 276, 279, 280, 283, 284, 408 |
| 3D-footprint Homologues: | 7d3t_D, 6j5b_C, 6qec_A, 7vou_C |
| Binding Motifs: | M0381 / MA1167.1 rGAATATtCyr M0400 GAATCTtdGATTCy MA1167.2 rGAATATtC |
| Binding Sites: | MA1167.1.1 MA1167.1.10 MA1167.1.11 MA1167.1.12 MA1167.1.13 MA1167.1.14 MA1167.1.15 MA1167.1.16 MA1167.1.17 MA1167.1.18 MA1167.1.19 MA1167.1.2 MA1167.1.20 MA1167.1.3 MA1167.1.4 MA1167.1.5 MA1167.1.6 MA1167.1.7 MA1167.1.8 MA1167.1.9 MA1167.2.1 MA1167.2.10 MA1167.2.11 MA1167.2.12 MA1167.2.13 MA1167.2.14 MA1167.2.15 MA1167.2.16 MA1167.2.17 MA1167.2.18 MA1167.2.19 MA1167.2.2 MA1167.2.20 MA1167.2.3 MA1167.2.4 MA1167.2.5 MA1167.2.6 MA1167.2.7 MA1167.2.8 MA1167.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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