Transcription Factor

Accessions: 6sdg_A (3D-footprint 20231221)
Names: A0A0G3FH20_MARPO, Auxin response factor
Organisms: Marchantia aquatica, Marchantia polymorpha (Liverwort)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: A0A0G3
Length: 318
Pfam Domains: 93-194 B3 DNA binding domain
212-294 Auxin response factor
Sequence:
(in bold interface residues)
1 IDAELWYACAGPQKALPPVGSVVAYLPQGHIEQVASFNNQELDAQIPRYNLPAVIPCMLN 60
61 DIQLSADPDSDEVYATLTLCPMSEQPKRKSRSFTKTLTVSDTSTHGGFSVPRRAADDCLP 120
121 KLDMSLNPPNQELVAKDLHGNEWRFRHIFRGQPKRHLLTTGWSVFVSQKRLVAGDAVLFL 180
181 RGENGQLRVGVRRAPRKVLTSPTMHIGVLAAAAHAATEKSRFSLIYNPRSCPSEFVIPYS 240
241 KYLKAVKSNFNVGQRFKMKFESEDPSDRRHTGTITGICDFDPARWPGSEWRSLQVNWDES 300
301 SSSERQERVSPWEVEPGN
Interface Residues: 100, 105, 106, 107, 109, 150, 152, 153, 155, 156
3D-footprint Homologues: 7et6_A, 6j9c_D, 6sdg_B, 6ycq_A
Binding Motifs: 6sdg_AB tTGTcGGCnnnnnGCcnACA
Publications: Kato H, Mutte SK, Suzuki H, Crespo I, Das S, Radoeva T, Fontana M, Yoshitake Y, Hainiwa E, van den Berg W, Lindhoud S, Ishizaki K, Hohlbein J, Borst JW, Boer DR, Nishihama R, Kohchi T, Weijers D. Design principles of a minimal auxin response system. Nat Plants 6:473-482 (2020). [Pubmed]
Related annotations: PaperBLAST

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