Transcription Factor

Accessions: AtMYB1 (AthaMYB 1.0)
Names: At3g09230, AtMYB1, ATMYB1 protein, F3L24.10 protein, Myb domain protein 1, MYB transcription factor
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q42575
Length: 394
Pfam Domains: 55-100 Myb-like DNA-binding domain
58-117 Myb-like DNA-binding domain
107-150 Myb-like DNA-binding domain
110-156 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MEAEIVRRSEVTGLRREVEESSIGRGDCDGDGGDVGEDAAGFVGTSGRGRRDRVKGPWSK 60
61 EEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIA 120
121 AHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIGTGSLVVDDSGFDRT 180
181 TTVASSEETLSSGGGCHVTTPIVSPEGKEATTSMEMSEEQCVEKTNGEGISRQDDKDPPT 240
241 LFRPVPRLSSFNACNHMEGSPSPHIQDQNQLQSSKQDAAMLRLLEGAYSERFVPQTCGGG 300
301 CCSNNPDGSFQQESLLGPEFVDYLDSPTFPSSELAAIATEIGSLAWLRSGLESSSVRVME 360
361 DAVGRLRPQGSRGHRDHYLVSEQGTNITNVLST*
Interface Residues: 55, 89, 90, 91, 92, 94, 95, 98, 99, 100, 141, 142, 145, 146, 149, 150, 151, 290, 324, 327, 329, 331, 333, 335, 336
3D-footprint Homologues: 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 7c4r_A, 3zqc_A, 5eyb_B, 6kks_A, 1mse_C, 2qsh_A
Binding Motifs: AtMYB1_I wamaGTTr
AtMYB1_II AGGTTA
Binding Sites: AAAAGTTA
ACAAGTTA
AGGTTA
GTCAGTTA
TACTGTTG
TGCGGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.