Transcription Factor
| Accessions: | F4HQG9 (JASPAR 2024) |
| Names: | F4HQG9_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | F4HQG9 |
| Length: | 644 |
| Pfam Domains: | 24-68 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60 61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSS 120 121 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKVSGD 180 181 IETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSG 240 241 MVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLI 300 301 MSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWAS 360 361 HGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSS 420 421 DDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAET 480 481 DALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQA 540 541 LFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLK 600 601 TRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST |
| Interface Residues: | 24, 59, 62, 63, 66, 67 |
| 3D-footprint Homologues: | 7d3t_D, 6j5b_C, 1mse_C |
| Binding Motifs: | MA1185.1 AGATATTTwt MA1185.2 AGATATTTw |
| Binding Sites: | MA1185.1.1 MA1185.1.10 MA1185.1.11 MA1185.1.12 MA1185.1.13 MA1185.1.14 MA1185.1.15 MA1185.1.16 MA1185.1.17 MA1185.1.18 MA1185.1.19 MA1185.1.2 MA1185.1.20 MA1185.1.3 MA1185.1.4 MA1185.1.5 MA1185.1.6 MA1185.1.7 MA1185.1.8 MA1185.1.9 MA1185.2.1 MA1185.2.10 MA1185.2.11 MA1185.2.12 MA1185.2.13 MA1185.2.14 MA1185.2.15 MA1185.2.16 MA1185.2.17 MA1185.2.18 MA1185.2.19 MA1185.2.2 MA1185.2.20 MA1185.2.3 MA1185.2.4 MA1185.2.5 MA1185.2.6 MA1185.2.7 MA1185.2.8 MA1185.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.