Transcription Factor
Accessions: | O80883 (JASPAR 2024), T10515 (AthalianaCistrome v4_May2016) |
Names: | AtM1, AtMYB101, MB101_ARATH, Myb-related protein 101, Protein ABNORMAL SHOOT 7, Transcription factor MYB101, AT2G32460, MYB101, T10515; |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
Length: | 490 |
Pfam Domains: | 20-67 Myb-like DNA-binding domain 23-82 Myb-like DNA-binding domain 73-116 Myb-like DNA-binding domain 76-123 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MDGGGETTATATMEGRGLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCR 60 61 LRWANHLRPNLKKGSFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKR 120 121 RQRAGLPLYPHEIQHQGIDIDDEFEFDLTSFQFQNQDLDHNHQNMIQYTNSSNTSSSSSS 180 181 FSSSSSQPSKRLRPDPLVSTNPGLNPIPDSSMDFQMFSLYNNSLENDNNQFGFSVPLSSS 240 241 SSSNEVCNPNHILEYISENSDTRNTNKKDIDAMSYSSLLMGDLEIRSSSFPLGLDNSVLE 300 301 LPSNQRPTHSFSSSPIIDNGVHLEPPSGNSGLLDALLEESQALSRGGLFKDVRVSSSDLC 360 361 EVQDKRVKMDFENLLIDHLNSSNHSSLGANPNIHNKYNEPTMVKVTVDDDDELLTSLLNN 420 421 FPSTTTPLPDWYRVTEMQNEASYLAPPSGILMGNHQGNGRVEPPTVPPSSSVDPMASLGS 480 481 CYWSNMPSIC |
Interface Residues: | 3, 19, 20, 21, 29, 31, 41, 43, 55, 56, 57, 58, 60, 61, 65, 66, 107, 108, 111, 112, 115, 116, 117 |
3D-footprint Homologues: | 5wx9_A, 3osg_A, 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A, 3zqc_A, 6kks_A, 1mse_C |
Binding Motifs: | M0558 / MA1173.1 aamyrwAACCGwawy M0506 aamyrTAACyGwmww MA1173.2 wAACCGwaw |
Binding Sites: | MA1173.1.1 MA1173.1.10 MA1173.1.11 MA1173.1.12 MA1173.1.13 / MA1173.1.8 MA1173.1.14 MA1173.1.15 MA1173.1.16 MA1173.1.17 MA1173.1.18 MA1173.1.19 MA1173.1.2 MA1173.1.20 MA1173.1.3 MA1173.1.4 MA1173.1.5 MA1173.1.6 MA1173.1.7 MA1173.1.9 MA1173.2.1 MA1173.2.10 MA1173.2.11 MA1173.2.12 MA1173.2.13 MA1173.2.14 MA1173.2.15 MA1173.2.16 MA1173.2.17 MA1173.2.18 MA1173.2.19 MA1173.2.2 MA1173.2.20 MA1173.2.3 / MA1173.2.6 MA1173.2.4 MA1173.2.5 MA1173.2.7 MA1173.2.8 MA1173.2.9 |
Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Related annotations: | PaperBLAST |
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