Transcription Factor

Accessions: O80883 (JASPAR 2024), T10515 (AthalianaCistrome v4_May2016)
Names: AtM1, AtMYB101, MB101_ARATH, Myb-related protein 101, Protein ABNORMAL SHOOT 7, Transcription factor MYB101, AT2G32460, MYB101, T10515;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB
Length: 490
Pfam Domains: 20-67 Myb-like DNA-binding domain
23-82 Myb-like DNA-binding domain
73-116 Myb-like DNA-binding domain
76-123 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MDGGGETTATATMEGRGLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCR 60
61 LRWANHLRPNLKKGSFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKR 120
121 RQRAGLPLYPHEIQHQGIDIDDEFEFDLTSFQFQNQDLDHNHQNMIQYTNSSNTSSSSSS 180
181 FSSSSSQPSKRLRPDPLVSTNPGLNPIPDSSMDFQMFSLYNNSLENDNNQFGFSVPLSSS 240
241 SSSNEVCNPNHILEYISENSDTRNTNKKDIDAMSYSSLLMGDLEIRSSSFPLGLDNSVLE 300
301 LPSNQRPTHSFSSSPIIDNGVHLEPPSGNSGLLDALLEESQALSRGGLFKDVRVSSSDLC 360
361 EVQDKRVKMDFENLLIDHLNSSNHSSLGANPNIHNKYNEPTMVKVTVDDDDELLTSLLNN 420
421 FPSTTTPLPDWYRVTEMQNEASYLAPPSGILMGNHQGNGRVEPPTVPPSSSVDPMASLGS 480
481 CYWSNMPSIC
Interface Residues: 3, 19, 20, 21, 29, 31, 41, 43, 55, 56, 57, 58, 60, 61, 65, 66, 107, 108, 111, 112, 115, 116, 117
3D-footprint Homologues: 5wx9_A, 3osg_A, 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A, 3zqc_A, 6kks_A, 1mse_C
Binding Motifs: M0558 / MA1173.1 aamyrwAACCGwawy
M0506 aamyrTAACyGwmww
MA1173.2 wAACCGwaw
Binding Sites: MA1173.1.1
MA1173.1.10
MA1173.1.11
MA1173.1.12
MA1173.1.13 / MA1173.1.8
MA1173.1.14
MA1173.1.15
MA1173.1.16
MA1173.1.17
MA1173.1.18
MA1173.1.19
MA1173.1.2
MA1173.1.20
MA1173.1.3
MA1173.1.4
MA1173.1.5
MA1173.1.6
MA1173.1.7
MA1173.1.9
MA1173.2.1
MA1173.2.10
MA1173.2.11
MA1173.2.12
MA1173.2.13
MA1173.2.14
MA1173.2.15
MA1173.2.16
MA1173.2.17
MA1173.2.18
MA1173.2.19
MA1173.2.2
MA1173.2.20
MA1173.2.3 / MA1173.2.6
MA1173.2.4
MA1173.2.5
MA1173.2.7
MA1173.2.8
MA1173.2.9
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.