Transcription Factor
Accessions: | T061564_1.02 (CISBP 1.02), Q12145 (JASPAR 2024) |
Names: | T061564_1.02;, YPR013C, Changed mutation rate protein 3, CMR3_YEAST, YP013_YEAST, Zinc finger protein CRM3 |
Organisms: | Saccharomyces cerevisiae |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:C2H2 ZF |
Length: | 317 |
Pfam Domains: | 255-276 Zinc finger, C2H2 type 255-276 C2H2-type zinc finger 282-306 Zinc finger, C2H2 type 282-306 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 MNFSLSKQSSEKQSSYTDKSRSPNIGMCTVNYKSNLPLQVSAVDQLSTGKGTQFYGHNSY 60 61 KNERECYNSTKINLPPISSLLPNFENNTPPNVDSRVQFPPQQVYQSMNVVPIVNEIYTPI 120 121 SMNATSDQYPIYYTESQQPIPHSQSPHLTSSAPLMMPVMVPTVYKPLTPYDKEPITIASE 180 181 PNFTAISMASHPNAALELCHDRPKSVPPGYGVLPTMQEASNGRTKSEPGAVLNGSATFSD 240 241 WKTDTRISSTKLRKQCPVCGKICSRPSTLKTHYLIHTGDTPFKCTWEGCTKSFNVKSNML 300 301 RHLKSHERKRNKVLNTT |
Interface Residues: | 239, 240, 242, 243, 246, 264, 265, 266, 267, 268, 270, 271, 272, 294, 295, 296, 297, 298, 299, 300, 301, 302, 304, 305, 306, 307, 310 |
3D-footprint Homologues: | 6ml4_A, 1g2f_F, 7ysf_A, 2i13_A, 6jnm_A, 8cuc_F, 7y3l_A, 1tf3_A, 7n5w_A, 3uk3_C, 6wmi_A, 1ubd_C, 8ssq_A, 7w1m_H, 5kl3_A, 2kmk_A, 1mey_C, 4x9j_A, 1f2i_J, 5und_A, 8gn3_A, 6blw_A, 5ei9_F, 6u9q_A, 5v3j_F, 5kkq_D, 2jpa_A, 1llm_D, 4m9v_C, 8h9h_G, 7eyi_G, 7y3m_I, 6e94_A, 6a57_A, 5yj3_D, 2gli_A, 2wbs_A, 1tf6_A, 7txc_E |
Binding Motifs: | M0540_1.02 yGTArATCm MA0434.1 yGymrATCm MA0434.2 GymrATC |
Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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