Transcription Factor

Accessions: Q9FVC1 (JASPAR 2024), T10346 (AthalianaCistrome v4_May2016)
Names: MADS-box protein SVP, Protein SHORT VEGETATIVE PHASE, SVP_ARATH, AT2G22540, SVP, T10346;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Uniprot: Q9FVC1
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MADS
Length: 240
Pfam Domains: 10-59 SRF-type transcription factor (DNA-binding and dimerisation domain)
92-170 K-box region
Sequence:
(in bold interface residues)
1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60
61 SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120
121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENER 180
181 LGMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGAPVDSESSDTSLRLGLPYGG 240
Interface Residues: 3, 4, 15, 18, 19, 23
3D-footprint Homologues: 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A
Binding Motifs: MA0555.1 mwwwCCaAAAAwGGAAAraw
M0479 tdCCmAAWArGGwAA
M0480 wyTTtCCtTWTTkGG
MA0555.2 wwwCCaAAAAwGGAAA
Binding Sites: MA0555.1.1
MA0555.1.10
MA0555.1.11
MA0555.1.12
MA0555.1.13
MA0555.1.14
MA0555.1.15
MA0555.1.16
MA0555.1.17
MA0555.1.18
MA0555.1.19
MA0555.1.2
MA0555.1.20
MA0555.1.3
MA0555.1.4
MA0555.1.5
MA0555.1.6
MA0555.1.7
MA0555.1.8
MA0555.1.9
MA0555.2.1
MA0555.2.10
MA0555.2.11
MA0555.2.12
MA0555.2.13
MA0555.2.14
MA0555.2.15
MA0555.2.16
MA0555.2.17
MA0555.2.18
MA0555.2.19
MA0555.2.2
MA0555.2.20
MA0555.2.3
MA0555.2.4
MA0555.2.5
MA0555.2.6
MA0555.2.7
MA0555.2.8
MA0555.2.9
Publications: Riechmann J. L., Wang M., Meyerowitz E. M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res. 24:3134-3141 (1996). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.