Transcription Factor
| Accessions: | Q9SDW0 (JASPAR 2024), T22792 (AthalianaCistrome v4_May2016) |
| Names: | TGT3A_ARATH, Trihelix DNA-binding protein GT-3a, Trihelix transcription factor GT-3a, AT5G01380, GT3a, T22792; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:Trihelix |
| Length: | 323 |
| Pfam Domains: | 50-135 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDRRNPFQHHHHHHQLHHHLIQQQQLPPPPLSTTATMDPGGGGGGGERIPQWSIEETKEL 60 61 LAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPD 120 121 AIRQQFPFYNEIQSIFEARMQRMLWSEATEPSTSSKRKHHQFSSDDEEEEVDEPNQDINE 180 181 ELLSLVETQKRETEVITTSTSTNPRKRAKKGKGVASGTKAETAGNTLKDILEEFMRQTVK 240 241 MEKEWRDAWEMKEIEREKREKEWRRRMAELEEERAATERRWMEREEERRLREEARAQKRD 300 301 SLIDALLNRLNRDHNDDHHNQGF |
| Interface Residues: | 98, 101, 102, 105, 107 |
| 3D-footprint Homologues: | 3osg_A, 7xur_A |
| Binding Motifs: | M0780 / MA1207.1 rrCACGTGtwwaWwdtk MA1207.2 CACGTGtwwaWwdt |
| Binding Sites: | MA1207.1.1 / MA1207.1.2 MA1207.1.10 MA1207.1.11 MA1207.1.12 MA1207.1.13 MA1207.1.14 MA1207.1.15 MA1207.1.16 MA1207.1.17 MA1207.1.18 MA1207.1.19 MA1207.1.20 MA1207.1.3 MA1207.1.4 MA1207.1.5 MA1207.1.6 MA1207.1.7 MA1207.1.8 MA1207.1.9 MA1207.2.1 / MA1207.2.2 MA1207.2.10 MA1207.2.11 MA1207.2.12 MA1207.2.13 MA1207.2.14 MA1207.2.15 MA1207.2.16 MA1207.2.17 MA1207.2.18 MA1207.2.19 MA1207.2.20 MA1207.2.3 MA1207.2.4 MA1207.2.5 MA1207.2.6 MA1207.2.7 MA1207.2.8 MA1207.2.9 |
| Publications: | Marechal E., Hiratsuka K., Delgado J., Nairn A., Qin J., Chait B. T., Chua N. H. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40:373-386 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.