Transcription Factor
Accessions: | ABI4 (Athamap 20091028), Q8L7W9 (JASPAR 2024) |
Names: | ABI4, AP2 domain transcription factor, AP2-EREBP transcription factor, Q8L7W9_MAIZE |
Organisms: | Zea mays, Zea mays subsp. mays |
Libraries: | Athamap 20091028 1, JASPAR 2024 2 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 248 |
Pfam Domains: | 41-90 AP2 domain |
Sequence: (in bold interface residues) | 1 MEASNNESAPTAEAAAGSGPAGGEGRKGKAPKGGPENGKFRYRGVRQRSWGKWVAEIREP 60 61 RKRSRKWLGTFATAEDAARAYDRAALLLYGPRAHLNLTSPPPPTLAAPRSHPHSSATSSA 120 121 PPALRPLLPRPPLHQLSSDGAPAPDFHYHNQFQRRLLPQPTPTLYYANTATASTVTTSVP 180 181 TRVAVPQEPAIAPAVGSSTSLQEPQVGTPEEARGEAGWDYNGGEEEDYAAALLWDEPEPF 240 241 FWFDVFLK |
Interface Residues: | 46, 48, 49, 50, 54, 56, 58, 63, 65, 67 |
3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D |
Binding Motifs: | ABI4 CrCCGCCccs ABI4(2) CGGTGCybyy MA0123.1 CGsyGCcccc |
Binding Sites: | MA0123.1.1 MA0123.1.10 / MA0123.1.11 / MA0123.1.9 MA0123.1.12 MA0123.1.13 MA0123.1.14 MA0123.1.15 MA0123.1.16 / MA0123.1.17 MA0123.1.18 MA0123.1.19 MA0123.1.2 / MA0123.1.3 MA0123.1.20 MA0123.1.4 MA0123.1.5 MA0123.1.6 MA0123.1.7 MA0123.1.8 |
Publications: | Niu X., Helentjaris T., Bate N. J. Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.. Plant Cell 14:2565-2575 (2002). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.