Transcription Factor

Accessions: ABI4 (Athamap 20091028), Q8L7W9 (JASPAR 2024)
Names: ABI4, AP2 domain transcription factor, AP2-EREBP transcription factor, Q8L7W9_MAIZE
Organisms: Zea mays, Zea mays subsp. mays
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 248
Pfam Domains: 41-90 AP2 domain
Sequence:
(in bold interface residues)
1 MEASNNESAPTAEAAAGSGPAGGEGRKGKAPKGGPENGKFRYRGVRQRSWGKWVAEIREP 60
61 RKRSRKWLGTFATAEDAARAYDRAALLLYGPRAHLNLTSPPPPTLAAPRSHPHSSATSSA 120
121 PPALRPLLPRPPLHQLSSDGAPAPDFHYHNQFQRRLLPQPTPTLYYANTATASTVTTSVP 180
181 TRVAVPQEPAIAPAVGSSTSLQEPQVGTPEEARGEAGWDYNGGEEEDYAAALLWDEPEPF 240
241 FWFDVFLK
Interface Residues: 46, 48, 49, 50, 54, 56, 58, 63, 65, 67
3D-footprint Homologues: 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D
Binding Motifs: ABI4 CrCCGCCccs
ABI4(2) CGGTGCybyy
MA0123.1 CGsyGCcccc
Binding Sites: MA0123.1.1
MA0123.1.10 / MA0123.1.11 / MA0123.1.9
MA0123.1.12
MA0123.1.13
MA0123.1.14
MA0123.1.15
MA0123.1.16 / MA0123.1.17
MA0123.1.18
MA0123.1.19
MA0123.1.2 / MA0123.1.3
MA0123.1.20
MA0123.1.4
MA0123.1.5
MA0123.1.6
MA0123.1.7
MA0123.1.8
Publications: Niu X., Helentjaris T., Bate N. J. Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.. Plant Cell 14:2565-2575 (2002). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.