Transcription Factor
Accessions: | HNF6_HUMAN (HOCOMOCO 10), Q9UBC0 (JASPAR 2024) |
Names: | Hepatocyte nuclear factor 6, HNF-6, HNF6_HUMAN, One cut domain family member 1, One cut homeobox 1 |
Organisms: | Homo sapiens |
Libraries: | HOCOMOCO 10 1, JASPAR 2024 2 1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 465 |
Pfam Domains: | 286-365 CUT domain 386-439 Homeobox domain |
Sequence: (in bold interface residues) | 1 MNAQLTMEAIGELHGVSHEPVPAPADLLGGSPHARSSVAHRGSHLPPAHPRSMGMASLLD 60 61 GGSGGGDYHHHHRAPEHSLAGPLHPTMTMACETPPGMSMPTTYTTLTPLQPLPPISTVSD 120 121 KFPHHHHHHHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNLYTPYHKDVAGMGQSLS 180 181 PLSSSGLGSIHNSQQGLPHYAHPGAAMPTDKMLTPNGFEAHHPAMLGRHGEQHLTPTSAG 240 241 MVPINGLPPHHPHAHLNAQGHGQLLGTAREPNPSVTGAQVSNGSNSGQMEEINTKEVAQR 300 301 ITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 360 361 RMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQ 420 421 QLGLELSTVSNFFMNARRRSLDKWQDEGSSNSGNSSSSSSTCTKA |
Interface Residues: | 316, 317, 318, 321, 322, 323, 324, 326, 328, 329, 332, 336, 362, 380, 387, 388, 389, 430, 431, 434, 435, 438, 439, 440, 441, 444 |
3D-footprint Homologues: | 1au7_A, 2o4a_A, 2d5v_B, 6fqp_B, 6m3d_C, 6es3_K, 7q3o_C, 3l1p_A, 1jgg_B, 4xrs_G, 2hdd_A, 3rkq_B, 5hod_A, 2hos_A, 1e3o_C, 8g87_X, 6fqq_E, 1o4x_A, 1du0_A, 4qtr_D, 1puf_B, 4xrm_B |
Binding Motifs: | MA0679.1 aaaAAATCrATAhy HNF6_HUMAN.H10MO.C|M01227 wwTATTGAYTtwdw MA0679.2 aaaaAATCAATAawww MA0679.3 aAATCAATA |
Binding Sites: | MA0679.2.1 MA0679.2.10 / MA0679.2.8 MA0679.2.10 / MA0679.2.11 MA0679.2.11 / MA0679.2.12 MA0679.2.13 MA0679.2.14 MA0679.2.14 / MA0679.2.15 MA0679.2.15 / MA0679.2.16 MA0679.2.17 MA0679.2.16 / MA0679.2.18 MA0679.2.17 / MA0679.2.19 MA0679.2.2 MA0679.2.20 MA0679.2.3 MA0679.2.4 MA0679.2.5 MA0679.2.5 / MA0679.2.6 MA0679.2.6 / MA0679.2.7 MA0679.2.7 / MA0679.2.8 MA0679.2.9 MA0679.2.12 MA0679.2.18 MA0679.2.19 MA0679.2.20 MA0679.2.9 MA0679.3.1 MA0679.3.10 / MA0679.3.14 / MA0679.3.2 / MA0679.3.20 MA0679.3.11 MA0679.3.12 MA0679.3.13 MA0679.3.15 MA0679.3.16 MA0679.3.17 MA0679.3.18 MA0679.3.19 MA0679.3.3 / MA0679.3.6 MA0679.3.4 / MA0679.3.5 MA0679.3.7 MA0679.3.8 MA0679.3.9 |
Publications: | Samadani U., Costa R. H. The transcriptional activator hepatocyte nuclear factor 6 regulates liver gene expression. Mol. Cell. Biol. 16:6273-6284 (1996). [Pubmed] |
Related annotations: | PaperBLAST |
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