Transcription Factor

Accessions: KAN4 (ArabidopsisPBM 20140210), Q9FJV5 (JASPAR 2024)
Names: ATS, KAN4, KAN4_ARATH, Probable transcription factor KAN4, Protein ABERRANT TESTA SHAPE, Protein KANADI 4
Organisms: Arabidopsis thaliana
Libraries: ArabidopsisPBM 20140210 1, JASPAR 2024 2
1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: MYB (GARP, G2)
Length: 276
Pfam Domains: 107-158 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MMMLESRNSMRASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFF 60
61 NKPLLSLGFDHHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVH 120
121 AVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQR 180
181 IEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKEVSRSISTQAYSHLGTTHHTKDNE 240
241 EKEDTNIHLNLDFTLGRPSWGMEYAEPSSDLTLLKC
Interface Residues: 107, 147, 148, 151, 152, 155, 156
3D-footprint Homologues: 7d3t_D, 6j5b_C, 6qec_A
Binding Motifs: KAN4 rGAATATTCy
KAN4_2 GAwTATTCyy
MA1028.1 GAATATTC
Publications: Gao P, Li X, Cui D, Wu L, Parkin I, Gruber MY. A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4. Plant Biotechnol J 8:979-93 (2010). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.