Transcription Factor

Accessions: T151379_1.02 (CISBP 1.02), I1N7U7 (JASPAR 2024)
Names: Glyma19g26560.1, T151379_1.02;, I1N7U7_SOYBN
Organisms: Glycine max
Libraries: CISBP 1.02 1, JASPAR 2024 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: experiment type:PBM, family:TCP
Length: 330
Pfam Domains: 66-156 TCP family transcription factor
Sequence:
(in bold interface residues)
1 MDPKGSKQQQPQEVVPKFLSLPQHHYQQQGNSNNNNMGENKPSEVKDFQIVVAAEKDESK 60
61 KQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 120
121 PSIIAATGTGTIPASALAAAGNSLSPQGSSLSSALHHQHQKIDELGCGSGGSSRASWQMV 180
181 GGNLGRPHLGVATTGLWPPHVSGFGFQTATTTTTTTSSGPSNATLATESSNYLQKIAFPG 240
241 FDLPTSATNMGHMSFTSILGGAGSQQMPGLELGLSQDGHIGVLNPQALNQIYQQMNHQAQ 300
301 AGRVHQQHQHQQQQHQQTPAKDDSQGSGGQ
Interface Residues: 74, 75, 76, 85, 87
3D-footprint Homologues: 7vp2_B, 7vp3_D
Binding Motifs: M1661_1.02 gGGsCCCAC
MA1019.1 gGGsCCCAC
MA1019.2 GGsCCCAC
MA2390.1 GGsCCCAC
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

Viola I.L, Reinheimer R, Ripoll R, Manassero N.G, Gonzalez D.H. Determinants of the DNA binding specificity of class I and class II TCP transcription factors. The Journal of biological chemistry 287:347-56 (2012). [Pubmed]
Related annotations: PaperBLAST

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