Transcription Factor
Accessions: | T151379_1.02 (CISBP 1.02), I1N7U7 (JASPAR 2024) |
Names: | Glyma19g26560.1, T151379_1.02;, I1N7U7_SOYBN |
Organisms: | Glycine max |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:TCP |
Length: | 330 |
Pfam Domains: | 66-156 TCP family transcription factor |
Sequence: (in bold interface residues) | 1 MDPKGSKQQQPQEVVPKFLSLPQHHYQQQGNSNNNNMGENKPSEVKDFQIVVAAEKDESK 60 61 KQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 120 121 PSIIAATGTGTIPASALAAAGNSLSPQGSSLSSALHHQHQKIDELGCGSGGSSRASWQMV 180 181 GGNLGRPHLGVATTGLWPPHVSGFGFQTATTTTTTTSSGPSNATLATESSNYLQKIAFPG 240 241 FDLPTSATNMGHMSFTSILGGAGSQQMPGLELGLSQDGHIGVLNPQALNQIYQQMNHQAQ 300 301 AGRVHQQHQHQQQQHQQTPAKDDSQGSGGQ |
Interface Residues: | 74, 75, 76, 85, 87 |
3D-footprint Homologues: | 7vp2_B, 7vp3_D |
Binding Motifs: | M1661_1.02 gGGsCCCAC MA1019.1 gGGsCCCAC MA1019.2 GGsCCCAC MA2390.1 GGsCCCAC |
Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] Viola I.L, Reinheimer R, Ripoll R, Manassero N.G, Gonzalez D.H. Determinants of the DNA binding specificity of class I and class II TCP transcription factors. The Journal of biological chemistry 287:347-56 (2012). [Pubmed] |
Related annotations: | PaperBLAST |
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