Transcription Factor

Accessions: Q9FY74 (JASPAR 2024)
Names: AtCAMTA1, AtSR2, Calmodulin-binding transcription activator 1, CMTA1_ARATH, EICBP.b, Ethylene-induced calmodulin-binding protein b, Signal-responsive protein 2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q9FY74
Length: 1007
Pfam Domains: 21-139 CG-1 domain
601-672 Ankyrin repeats (3 copies)
645-677 Ankyrin repeat
824-841 IQ calmodulin-binding motif
846-865 IQ calmodulin-binding motif
Sequence:
(in bold interface residues)
1 MVDRRSFGSITPPLQLDMEQLLSEAQHRWLRPTEICEILQNYHKFHIASESPTRPASGSL 60
61 FLFDRKVLRYFRKDGHNWRKKKDGKTIREAHEKLKVGSIDVLHCYYAHGEANENFQRRCY 120
121 WMLEQHLMHIVFVHYLEVKGNRTSIGMKENNSNSVNGTASVNIDSTASPTSTLSSLCEDA 180
181 DTGDSQQASSVLRPSPEPQTGNRYGWTPAPGMRNVSQVHGNRVRESDSQRLVDVRALDTV 240
241 GNSLTRFHDQPYCNNLLTQMQPSNTDSMLVEENSEKGGRLKAEHIRNPLQTQFNWQDDTD 300
301 LALFEQSAQDNFETFSSLLGSENLQPFGISYQAPPSNMDSEYMPVMKILRRSEDSLKKVD 360
361 SFSKWAIKELGEMEDLQMQSSRGDIAWTTVECETAAAGISLSPSLSEDQRFTIVDFWPKS 420
421 AKTDAEVEVMVIGTFLLSPQEVTKYNWSCMFGEVEVPAEILVDGVLCCHAPPHTAGHVPF 480
481 YVTCSNRFACSEVREFDFLSGSTQKINATDVYGTYTNEASLQLRFEKMLAHRDFVHEHHI 540
541 FEDVGDKRRQISKIMLLKEEKEYLLPGTYQRDSTKQEPKGQLFRELFEEELYIWLIHKVT 600
601 EEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSALHWAAFSGREE 660
661 TVAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDS 720
721 KENSPANSCGEKAVQTVSERTAAPMTYGDVPEKLSLKDSLTAVRNATQAADRLHQVFRMQ 780
781 SFQRKQLCDIGDDEKIDISDQLAVSFAASKTKNPGQGDVSLSCAATHIQKKYRGWKKRKE 840
841 FLLIRQRIVKIQAHVRGHQVRKQYRTVIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTV 900
901 EPEPPVSAICPRIPQEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVV 960
961 EGFRENEASSSASINNKEEEAVNCEEDDFIDIESLLNDDTLMMSISP
Interface Residues: 275, 910, 911, 913, 914, 927
3D-footprint Homologues: 6g3b_A, 5fmf_V
Binding Motifs: MA1197.1 aAarCGCGTkdr
MA1197.2 AarCGCGTk
Binding Sites: MA1197.1.1
MA1197.1.10
MA1197.1.11
MA1197.1.12
MA1197.1.13
MA1197.1.14
MA1197.1.15
MA1197.1.16 / MA1197.1.4
MA1197.1.17 / MA1197.1.18
MA1197.1.19
MA1197.1.2
MA1197.1.20
MA1197.1.3
MA1197.1.5
MA1197.1.6
MA1197.1.7
MA1197.1.8
MA1197.1.9
MA1197.2.1
MA1197.2.10
MA1197.2.11
MA1197.2.12
MA1197.2.13
MA1197.2.14
MA1197.2.15
MA1197.2.16 / MA1197.2.4
MA1197.2.17 / MA1197.2.18
MA1197.2.19
MA1197.2.2
MA1197.2.20
MA1197.2.3
MA1197.2.5
MA1197.2.6
MA1197.2.7
MA1197.2.8
MA1197.2.9
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.