Transcription Factor

						

			
Accessions: GATA1 (Athamap 20091028), T084294_1.02 (CISBP 1.02), T13696 (AthalianaCistrome v4_May2016)

			
Names: AtGATA-1, GATA transcription factor 1, GATA1, T084294_1.02;, AT3G24050, T13696;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, CISBP 1.02 2, AthalianaCistrome v4_May2016 3
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Uniprot: Q8LAU9
Notes: experiment type:PBM, family:GATA, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-GATA
Length: 274
Pfam Domains:   196-230 GATA zinc finger
Sequence: 
(in bold interface residues)		   1 MEMESFMDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDDLGVVEEED   60
  61 LEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTTTSN  120
 121 SSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLRVLWTGNEQGGIQKK  180
 181 KTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSP  240
 241 TFTAELHSNSHRKIVEMRKQYQSGDGDGDRKDCG
Interface Residues: 205, 206, 208, 219, 223, 224
3D-footprint Homologues: 1gat_A, 4hc9_A, 3dfx_B, 3vd6_C, 4gat_A
Binding Motifs: GATA1 gkckwwycAT
M0763_1.02 wyagATctrw
M0286 rrwyyrGATCTrrr
M0288 rTGrTGrTGrTGrTG
Binding Sites: GATA1_1
GATA1_2
GATA1_3
GATA1_4
GATA1_5
GATA1_6
GATA1_7
GATA1_8
GATA1_9
			
Publications: Teakle GR, Manfield IW, Graham JF, Gilmartin PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol. 50:43-57. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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