Transcription Factor
| Accessions: | ICU4 (ArabidopsisPBM 20140210), T06272 (AthalianaCistrome v4_May2016) |
| Names: | ATHB-15, ATHB15, CNA, ICU4, AT1G52150, T06272; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, AthalianaCistrome v4_May2016 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | HD (HD-ZIPIII), ecotype:Col-0, experiment type: DAP-seq, family:HB |
| Length: | 837 |
| Pfam Domains: | 17-75 Homeobox domain 161-369 START domain 690-837 MEKHLA domain |
| Sequence: (in bold interface residues) | 1 MAMSCKDGKLGCLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPK 60 61 QIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVHENSYFRQH 120 121 TPNPSLPAKDTSCESVVTSGQHQLASQNPQRDASPAGLLSIAEETLAEFLSKATGTAVEW 180 181 VQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVAEIVKDRPSWFRECRAVEVM 240 241 NVLPTANGGTVELLYMQLYAPTTLAPPRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSM 300 301 PLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYESPKVLAQKTT 360 361 MAALRQLKQIAQEVTQTNSSVNGWGRRPAALRALSQRLSRGFNEAVNGFTDEGWSVIGDS 420 421 MDDVTITVNSSPDKLMGLNLTFANGFAPVSNVVLCAKASMLLQNVPPAILLRFLREHRSE 480 481 WADNNIDAYLAAAVKVGPCSARVGGFGGQVILPLAHTIEHEEFMEVIKLEGLGHSPEDAI 540 541 VPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKQEVSSP 600 601 NRTLDLASALEIGSAGTKASTDQSGNSTCARSVMTIAFEFGIESHMQEHVASMARQYVRG 660 661 IISSVQRVALALSPSHISSQVGLRTPLGTPEAQTLARWICQSYRGYMGVELLKSNSDGNE 720 721 SILKNLWHHTDAIICCSMKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLC 780 781 SEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV |
| Interface Residues: | 17, 18, 20, 60, 61, 63, 64, 65, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 80, 81 |
| 3D-footprint Homologues: | 2ld5_A, 1nk2_P, 7psx_B, 7q3o_C, 6es3_K, 6ryd_F, 5jlw_D, 2xsd_C, 1ig7_A, 1e3o_C, 1le8_A, 1au7_A, 7xrc_C, 5flv_I, 3d1n_M, 6wig_A, 1b72_A, 5zfz_A, 4cyc_A, 1zq3_P, 8g87_X, 5hod_A, 3l1p_A, 1o4x_A, 1du0_A, 5zjt_E, 4qtr_D, 3a01_E, 2h1k_B, 1jgg_B, 3lnq_A, 2lkx_A, 1puf_A, 6a8r_A, 4xrs_G, 3cmy_A, 2hdd_A, 5vpe_D, 3rkq_B, 2r5y_A, 1puf_B, 1fjl_B, 2hos_A, 6mg1_B, 6m3d_C |
| Binding Motifs: | ICU4 gtAATdATTa M0419 rawwrTAATGATkAy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.