Transcription Factor

Accessions: BkdR (DBTBS 1.0)
Names: BkdR, D4FYJ3_BACNA
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Uniprot: D4FYJ3
Length: 692
Pfam Domains: 118-166 PAS domain
118-218 PAS fold
121-219 PAS domain
123-222 PAS fold
127-220 PAS domain
237-339 PAS fold
238-282 PAS domain
244-341 PAS fold
368-535 Sigma-54 interaction domain
392-512 AAA domain (dynein-related subfamily)
392-511 ATPase family associated with various cellular activities (AAA)
644-684 Bacterial regulatory protein, Fis family
Sequence:
(in bold interface residues)
1 MQKVLIVGAGKRGTALLHILIKTAIIDIIAVVDKDPEAPGLKEAEQYGIAVSSDWKPYIQ 60
61 QKPDIVIHTTGDQAVFDELLQRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYD 120
121 RIFNSTHDGMIFIDINEEIILFNHMAEKMVGKKREEVIGRPIKEVIPSTKMPRILKTRVP 180
181 EYNQKQLLGDHLQIVTTRLPIIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEA 240
241 IIQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRR 300
301 PVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAELNRARQIIRTLE 360
361 AKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNKF 420
421 IRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQAK 480
481 LLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPL 540
541 RQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIFL 600
601 NPHMEWIEKDHLPVFELEQKENDTDQGTGFNFPDIEGEKLSVAVEKFEAHLIQQTLEKHH 660
661 FNRTKTAKALGVSIRNLYYKMDKYGLANEGMQ
Interface Residues: 673, 674, 675, 676, 678, 679
3D-footprint Homologues: 4fth_A
Binding Motifs: BkdR TGCArATkATkGCr
Binding Sites: ptb_1
ptb_2
ptb_3
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.