Transcription Factor
Accessions: | BkdR (DBTBS 1.0) |
Names: | BkdR, D4FYJ3_BACNA |
Organisms: | Bacillus subtilis |
Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
Uniprot: | D4FYJ3 |
Length: | 692 |
Pfam Domains: | 118-166 PAS domain 118-218 PAS fold 121-219 PAS domain 123-222 PAS fold 127-220 PAS domain 237-339 PAS fold 238-282 PAS domain 244-341 PAS fold 368-535 Sigma-54 interaction domain 392-512 AAA domain (dynein-related subfamily) 392-511 ATPase family associated with various cellular activities (AAA) 644-684 Bacterial regulatory protein, Fis family |
Sequence: (in bold interface residues) | 1 MQKVLIVGAGKRGTALLHILIKTAIIDIIAVVDKDPEAPGLKEAEQYGIAVSSDWKPYIQ 60 61 QKPDIVIHTTGDQAVFDELLQRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYD 120 121 RIFNSTHDGMIFIDINEEIILFNHMAEKMVGKKREEVIGRPIKEVIPSTKMPRILKTRVP 180 181 EYNQKQLLGDHLQIVTTRLPIIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEA 240 241 IIQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRR 300 301 PVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAELNRARQIIRTLE 360 361 AKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNKF 420 421 IRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQAK 480 481 LLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPL 540 541 RQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIFL 600 601 NPHMEWIEKDHLPVFELEQKENDTDQGTGFNFPDIEGEKLSVAVEKFEAHLIQQTLEKHH 660 661 FNRTKTAKALGVSIRNLYYKMDKYGLANEGMQ |
Interface Residues: | 673, 674, 675, 676, 678, 679 |
3D-footprint Homologues: | 4fth_A |
Binding Motifs: | BkdR TGCArATkATkGCr |
Binding Sites: | ptb_1 ptb_2 ptb_3 |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.