Transcription Factor

						

			
Accessions: F4JIF5 (JASPAR 2024), T17119 (AthalianaCistrome v4_May2016)

			
Names: AtTCX2, Protein SOL2, Protein tesmin/TSO1-like CXC 2, Protein TSO1-like 2, TCX2_ARATH, AT4G14770, T17119;, TCX2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:CPP
Length: 674
Pfam Domains:   373-411 Tesmin/TSO1-like CXC domain
  458-496 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MDTPQKSITQIGTPISKSRFEDSPVFNYINSLSPIRPVRSIPNPNQFSSLNFTSPPSVFT   60
  61 SPHLTSSHKESRFFKTHNSSSSDPTNSVESQEDESTSHEEVPAEGEDTKGLNIDDCMREE  120
 121 ASVETNLDDSVASPCGGNTTDLSLVPYAPTRGEDGSCEDNGMELQKMHDNVQGKTETPDW  180
 181 ESLIADASELLIFDSPDASEAFRCFMMQRASNSEARFRNGVEKQTMQHDSNKEPESANAI  240
 241 PYEAVSLLHRGIRRRCLDFEMPGNKQTSSENNTAACESSSRCVVPSIGLHLNAILMSSKD  300
 301 CKTNVTQDYSCSANIQVGLQRSISTLQDSLDQTENEIREDADQDVPVEPALQELNLSSPK  360
 361 KKRVKLDSGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKPIHEDVVLAT  420
 421 RKQIESRNPLAFAPKVIRNSDSVQETGDDASKTPASARHKRGCNCKKSNCLKKYCECYQG  480
 481 GVGCSINCRCEGCKNAFGRKDGSSIDMEAEQEEENETSEKSRTAKSQQNTEVLMRKDMSS  540
 541 ALPTTPTPIYRPELVQLPFSSSKNRMPPPQSLLGGGSSSGIFNSQYLRKPDISLSQSRIE  600
 601 KSFETVAVDGAEQMPEILIHSPIPNIKSVSPNGKRVSPPHMESSSSGSILGRRNGGRKLI  660
 661 LQSIPSFPSLTPQH
Interface Residues: 388, 474, 491, 494, 495, 498, 499
3D-footprint Homologues: 5fd3_A, 8cef_H
Binding Motifs: M0358 / MA1162.1 wTTyaAAATTyRAAw
M0355 TTyaAAATTyRAAw
Binding Sites: MA1162.1.1 / MA1162.1.2 / MA1162.1.3
MA1162.1.10
MA1162.1.11
MA1162.1.12
MA1162.1.13
MA1162.1.14
MA1162.1.15
MA1162.1.16
MA1162.1.17
MA1162.1.18
MA1162.1.19
MA1162.1.20
MA1162.1.4
MA1162.1.5
MA1162.1.6
MA1162.1.7
MA1162.1.8
MA1162.1.9
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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