Transcription Factor
| Accessions: | F4JUI3 (JASPAR 2024), T20837 (AthalianaCistrome v4_May2016) |
| Names: | AtBPC5, BPC5_ARATH, GAGA-motif binding transcriptional activator BBR/BPC5, Protein BASIC PENTACYSTEINE5, AT4G38910, BPC5, T20837; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:BBR/BPC |
| Length: | 283 |
| Pfam Domains: | 1-283 GAGA binding protein-like family |
| Sequence: (in bold interface residues) | 1 MESGGQYENGRYKPDYYKGTQSVNVMPKKEQHNALVMNKKIISILAERDAAVKERNEAVA 60 61 ATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNLNYILSCAKRGGSQRFI 120 121 TEESHLPNPSPISTIPPEAANTRPTKRKKESKQGKKMGEDLNRPVASPGKKSRKDWDSND 180 181 VLVTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGR 240 241 KMSGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK |
| Interface Residues: | 66, 85, 109, 110, 113, 114, 153 |
| 3D-footprint Homologues: | 1msw_D, 8dc2_A, 2p0j_A |
| Binding Motifs: | M0152 / MA1403.1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG M0153 rrrararaGAGARAGAGAGAGAGAGAGAG |
| Publications: | Kooiker M., Airoldi C. A., Losa A., Manzotti P. S., Finzi L., Kater M. M., Colombo L. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.. Plant Cell 17:722-729 (2005). [Pubmed] |
| Related annotations: | PaperBLAST |
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