Transcription Factor
| Accessions: | T12080 (AthalianaCistrome v4_May2016), Q9SCK6 (JASPAR 2024) |
| Names: | ANAC062, AT3G49530, T12080;, NAC domain-containing protein 62, NAC62_ARATH, Protein NTM1-like 6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 469 |
| Pfam Domains: | 13-141 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MNQNLHVLSMDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPD 60 61 FSVIKTKDSEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLV 120 121 FHAGRAPRGTRTNWIIHEYRATEDDLSGTNPGQSPFVICKLFKKEELVLGEEDSKSDEVE 180 181 EPAVSSPTVEVTKSEVSEVIKTEDVKRHDIAESSLVISGDSHSDACDEATTAELVDFKWY 240 241 PELESLDFTLFSPLHSQVQSELGSSYNTFQPGSSNFSGNNNNSFQIQTQYGTNEVDTYIS 300 301 DFLDSILKSPDEDPEKHKYVLQSGFDVVAPDQIAQVCQQGSAVDMSNDVSVTGIQIKSRQ 360 361 AQPSGYTNDYIAQGNGPRRLRLQSNFNGINTKNPELQAIKREAEDTVGESIKKRCGKLMR 420 421 SKNVTGFVFKKITSVKCSYGGLFRAAVVAVVFLMSVCSLTVDFRASAVS |
| Interface Residues: | 81, 86, 88, 97, 99, 101, 122, 126, 127, 128, 131, 140, 154, 155, 158, 159 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A, 2oeh_A |
| Binding Motifs: | M0672 CTTmaycabyAAGtaWyy M0684 CTTrsykatkAAGkA MA1676.1 wwTTcCTTAathwtTAAGtAAhhw MA1676.2 wwgtTAAGTAAyhw MA1676.3 TAAGTAA |
| Binding Sites: | MA1676.1.1 MA1676.1.10 MA1676.1.11 MA1676.1.12 MA1676.1.13 MA1676.1.14 MA1676.1.15 MA1676.1.16 MA1676.1.17 MA1676.1.18 MA1676.1.19 MA1676.1.2 MA1676.1.20 MA1676.1.3 MA1676.1.4 MA1676.1.5 MA1676.1.6 MA1676.1.7 MA1676.1.8 MA1676.1.9 MA1676.2.1 MA1676.2.10 MA1676.2.11 MA1676.2.12 MA1676.2.13 MA1676.2.14 MA1676.2.15 MA1676.2.16 MA1676.2.17 MA1676.2.18 MA1676.2.19 MA1676.2.2 MA1676.2.20 MA1676.2.3 MA1676.2.4 MA1676.2.5 MA1676.2.6 MA1676.2.7 MA1676.2.8 MA1676.2.9 MA1676.3.2 / MA1676.3.3 MA1676.3.1 / MA1676.3.11 / MA1676.3.14 / MA1676.3.17 / MA1676.3.18 / MA1676.3.19 / MA1676.3.20 MA1676.3.12 / MA1676.3.6 MA1676.3.10 / MA1676.3.4 MA1676.3.13 MA1676.3.15 / MA1676.3.8 MA1676.3.16 MA1676.3.5 MA1676.3.7 MA1676.3.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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