Transcription Factor
| Accessions: | P97489 (JASPAR 2024) |
| Names: | GATA-binding factor 5, GATA5_MOUSE, Transcription factor GATA-5 |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P97489 |
| Length: | 404 |
| Pfam Domains: | 1-181 GATA-type transcription activator, N-terminal 196-229 GATA zinc finger 250-283 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MYQSLALAQSPGQGTYADSGAFLHSSGTGSPVFVAPTRMPSMLPYLPSCEPGSQAPALAA 60 61 HSSWTQAVAADSSAFGSGSPHPPAAHPPGATTFPFAHSPPGSGSGGSAGVRDGGAFQGAL 120 121 LAREQYPTPLGRPMGASYPTTYPAYMSSDVAPSWTSGAFDSSILHGLQARPGGLPGRRTS 180 181 FVPDFLEEFPGEGRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRPLVRPQKRL 240 241 SSSRRSGLCCSNCHTATTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRK 300 301 PKNPAKIKGSSGSTANTTASSPTLLNSESSATTLKAESSLASPVCAGPTITSQASSPADE 360 361 SLASSHLEFKFEPEDFAFTSSSMSPQAGLSGVLRQETWCALALA |
| Interface Residues: | 205, 206, 208, 218, 222, 259, 260, 262, 272, 276, 277, 280, 297, 299, 300 |
| 3D-footprint Homologues: | 3vd6_C, 4hc9_A, 1gat_A, 3dfx_B, 4gat_A |
| Binding Motifs: | PB0022.1 wwwrcTGATAAGrrgat PB0126.1 rmcmrAGATATCwgybk |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.