Transcription Factor
| Accessions: | Q6QPM2 (JASPAR 2024), T18323 (AthalianaCistrome v4_May2016) |
| Names: | GAT19_ARATH, GATA transcription factor 19, Protein HAN-LIKE 2, AT4G36620, GATA19, T18323; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-GATA |
| Length: | 211 |
| Pfam Domains: | 77-111 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MGFSMFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTIGWDFLNG 60 61 SKKGGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNST 120 121 SGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPANNEYSYVDDV 180 181 RVVDHDVTTDPFLSWRLNVADRTGLVHDFTM |
| Interface Residues: | 86, 87, 89, 100, 104, 105, 108 |
| 3D-footprint Homologues: | 1gat_A, 4hc9_A, 3dfx_B, 3vd6_C, 4gat_A |
| Binding Motifs: | M0297 / MA1323.1 yvGATCbGATy M0295 yrGATCsGATy MA1323.2 GATCbGATy |
| Binding Sites: | MA1323.1.1 MA1323.1.10 MA1323.1.11 MA1323.1.12 MA1323.1.13 MA1323.1.14 MA1323.1.15 MA1323.1.16 MA1323.1.17 MA1323.1.18 MA1323.1.19 MA1323.1.2 MA1323.1.20 MA1323.1.3 MA1323.1.4 MA1323.1.5 MA1323.1.6 MA1323.1.7 MA1323.1.8 MA1323.1.9 MA1323.2.1 MA1323.2.10 MA1323.2.11 MA1323.2.12 MA1323.2.13 MA1323.2.14 MA1323.2.15 MA1323.2.16 MA1323.2.17 MA1323.2.18 MA1323.2.19 MA1323.2.2 MA1323.2.20 MA1323.2.3 MA1323.2.4 MA1323.2.5 MA1323.2.6 MA1323.2.7 MA1323.2.8 MA1323.2.9 |
| Publications: | Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). [Pubmed] |
| Related annotations: | PaperBLAST |
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