Transcription Factor
| Accessions: | Q8VWG0 (JASPAR 2024), T05875 (AthalianaCistrome v4_May2016) |
| Names: | AtbZIP transcription factor, Basic leucine-zipper 52, Q8VWG0_ARATH, Similar to bZIP transcription factors, AT1G06850, bZIP52, T05875; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 337 |
| Pfam Domains: | 148-199 Basic region leucine zipper 150-205 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MEKSDPPPVPKPGATIIPSSDPIPNADPIPSSSFHRRSRSDDMSMFMFMDPLSSAAPPSS 60 61 DDLPSDDDLFSSFIDVDSLTSNPNPFQNPSLSSNSVSGAANPPPPPSSRPRHRHSNSVDA 120 121 GCAMYAGDIMDAKKAMPPEKLSELWNIDPKRAKRILANRQSAARSKERKARYIQELERKV 180 181 QSLQTEATTLSAQLTLYQRDTNGLANENTELKLRLQAMEQQAQLRNALNEALRKEVERMK 240 241 METGEISGNSDSFDMGMQQIQYSSSTFMAIPPYHGSMNLHDMQMHSSFNPMEMSNSQSVS 300 301 DFLQNGRMQGLEISSNSSSLVKSEGPSLSASESSSAY |
| Interface Residues: | 154, 158, 159, 161, 162, 165, 166 |
| 3D-footprint Homologues: | 7x5e_E, 1dh3_C, 2dgc_A |
| Binding Motifs: | M0200 / MA1343.1 wTGmCAGCykktmw M0187 wkmcmrGCTGkCAw MA1343.2 TGmCAGCy |
| Binding Sites: | MA1343.2.16 MA1343.2.14 MA1343.2.2 MA1343.1.1 MA1343.1.10 MA1343.1.11 MA1343.1.12 MA1343.1.13 MA1343.1.14 MA1343.1.15 MA1343.1.16 MA1343.1.17 MA1343.1.18 MA1343.1.19 MA1343.1.2 MA1343.1.20 MA1343.1.3 MA1343.1.4 MA1343.1.5 MA1343.1.6 MA1343.1.7 MA1343.1.8 MA1343.1.9 MA1343.2.19 MA1343.2.1 MA1343.2.10 MA1343.2.11 MA1343.2.12 MA1343.2.13 MA1343.2.15 MA1343.2.17 MA1343.2.18 MA1343.2.20 MA1343.2.3 MA1343.2.4 MA1343.2.5 MA1343.2.6 MA1343.2.7 MA1343.2.8 MA1343.2.9 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.