Transcription Factor
| Accessions: | P42003 (JASPAR 2024) |
| Names: | MAD_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 455 |
| Pfam Domains: | 45-145 MH1 domain 256-432 MH2 domain 310-393 Interferon-regulatory factor 3 |
| Sequence: (in bold interface residues) | 1 MDTDDVESNTSSAMSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKG 60 61 AIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 120 121 ELCQYPFSAKQKEVCINPYHYKRVESPVLPPVLVPRHSEFAPGHSMLQFNHVAEPSMPHN 180 181 VSYSNSGFNSHSLSTSNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGG 240 241 QLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCC 300 301 LGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPST 360 361 VCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVT 420 421 STPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS |
| Interface Residues: | 86, 88, 90, 95, 303, 310, 313, 317 |
| 3D-footprint Homologues: | 6fzs_A, 6h3r_A, 5nm9_A, 5od6_A, 5mey_A, 6vdd_A |
| Binding Motifs: | MA0535.1 shGrCGcSRvcRsms |
| Binding Sites: | MA0535.1.1 MA0535.1.10 MA0535.1.11 MA0535.1.12 MA0535.1.13 MA0535.1.14 MA0535.1.15 MA0535.1.16 MA0535.1.17 MA0535.1.18 MA0535.1.19 MA0535.1.2 MA0535.1.20 MA0535.1.3 MA0535.1.4 MA0535.1.5 MA0535.1.6 MA0535.1.7 MA0535.1.8 MA0535.1.9 |
| Publications: | Bergman C.M, Carlson J.W, Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics (Oxford, England) 21:1747-9 (2005). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.