Transcription Factor
| Accessions: | Q9VDF0 (JASPAR 2024) |
| Names: | Q9VDF0_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9VDF0 |
| Length: | 323 |
| Pfam Domains: | 199-251 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MDIATKSSKAAFSIENILEQKSSSHRSQSRRGSSQSPVAVTAGIATPHALAMPKASLATG 60 61 SSSAAPTPSPSSATNIYDLSREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQ 120 121 VLQLQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAY 180 181 PAASFYMSNFGVKRKGGQIRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKT 240 241 WFQNRRAKWRRANLSKRSASAQGPIAGAAVGSPSSASSSSVPVLNLGSGSRCGQQSDEED 300 301 RMYLSEDDEDDDEDEGEADETPK |
| Interface Residues: | 192, 195, 196, 198, 200, 236, 237, 239, 240, 243, 244, 247, 248, 251 |
| 3D-footprint Homologues: | 1puf_A, 3d1n_M, 1nk2_P, 2ld5_A, 7q3o_C, 5jlw_D, 2lkx_A, 6es3_K, 3rkq_B, 5flv_I, 7psx_B, 1le8_B, 1mnm_C, 1k61_B, 1ig7_A, 7xrc_C, 1e3o_C, 1au7_A, 2xsd_C, 1le8_A, 1o4x_A, 6a8r_A, 4qtr_D, 3a01_E, 2h1k_B, 1du0_A, 3lnq_A, 1jgg_B, 4xrs_G, 3cmy_A, 2hdd_A, 5zfz_A, 2r5y_A, 1puf_B, 6m3d_C, 8g87_X, 1fjl_B, 5zjt_E, 4cyc_A, 1zq3_P, 1b72_A, 5hod_A, 3l1p_A, 2hos_A |
| Binding Motifs: | MA0183.1 wYkAATWA |
| Binding Sites: | MA0183.1.1 MA0183.1.10 MA0183.1.11 MA0183.1.12 MA0183.1.13 MA0183.1.14 / MA0183.1.16 MA0183.1.15 MA0183.1.17 MA0183.1.18 MA0183.1.19 MA0183.1.2 MA0183.1.20 MA0183.1.3 MA0183.1.4 MA0183.1.5 MA0183.1.6 MA0183.1.7 MA0183.1.8 MA0183.1.9 |
| Publications: | Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.