Transcription Factor

Accessions: AtMYB13 (AthaMYB 1.0)
Names: At1g06180, AtMYB13, F9P14.4 protein, Myb domain protein 13, MYB transcription factor, Putative uncharacterized protein At1g06180
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9LNC9
Length: 247
Pfam Domains: 14-61 Myb-like DNA-binding domain
17-76 Myb-like DNA-binding domain
67-112 Myb-like DNA-binding domain
70-120 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60
61 LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHSQ 120
121 DQNNKEDFVSTTAAEMPTSPQQQSSSSADISAITTLGNNNDISNSNKDSATSSEDVLAII 180
181 DESFWSEVVLMDCDISGNEKNEKKIENWEGSLDRNDKGYNHDMEFWFDHLTSSSCIIGEM 240
241 SDISEF*
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 3osg_A, 2kdz_A, 7xur_A, 3zqc_A, 1mse_C, 5eyb_B, 6kks_A
Binding Motifs: AtMYB13_I wwmaGTTr
AtMYB13_II GgTwGkTG
Binding Sites: AAAAGTTA
ACAAGTTA
AGTAGTTA
ATTAGTTG
GCTTGTTG
GGTAGGTG
GGTTGGTG
GTCAGTTA
GTTAGTTG
TACTGTTG
TGCGGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.