Transcription Factor

Accessions: P23463 (JASPAR 2024)
Names: Homeobox protein Hox-4.3, Homeobox protein Hox-5.4, Homeobox protein Hox-D8, HXD8_MOUSE
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P23463
Length: 289
Pfam Domains: 196-252 Homeobox domain
Sequence:
(in bold interface residues)
1 MSSYFVNPLYSKYKAAAAAAAAAAAAAAGEAINPTYYDCHFAPEVSGRHAAALQLYGNSA 60
61 AGFPHAHPHPHPHPSPPPGCGGGGGPGPGQDYFHAGAGSPTAAYQAAPPPPHPPPPPPPP 120
121 PCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSP 180
181 SQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVK 240
241 IWFQNRRMKWKKENNKDKFPASRPEAKDGDPKKEVSGLEEDGAEGCPTN
Interface Residues: 196, 197, 198, 199, 237, 238, 240, 241, 244, 245, 248, 249, 252
3D-footprint Homologues: 1puf_A, 3cmy_A, 6fqp_B, 1fjl_B, 1ig7_A, 2h1k_B, 2lkx_A, 1jgg_B, 1nk2_P, 1zq3_P, 6m3d_C, 3lnq_A, 2ld5_A, 6es3_K, 4xrs_G, 2hdd_A, 7q3o_C, 4cyc_A, 2r5y_A, 1puf_B, 5flv_I, 3l1p_A, 2hos_A, 5zjt_E, 1b72_A, 5hod_A, 3a01_E, 7psx_B, 5jlw_D, 3rkq_B, 1e3o_C, 7xrc_C, 2xsd_C, 1le8_A, 1mnm_C, 5zfz_A, 1k61_B, 4qtr_D, 1o4x_A, 6a8r_A, 4xrm_B, 1le8_B, 1du0_A
Binding Motifs: MA0910.1 / PH0080.1 taadTAATTAATrgctw
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Related annotations: PaperBLAST

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