Transcription Factor
| Accessions: | Q9FIS1 (JASPAR 2024), T22726 (AthalianaCistrome v4_May2016) |
| Names: | AGL42_ARATH, MADS-box protein AGL42, Protein AGAMOUS-LIKE 42, Protein FOREVER YOUNG FLOWER, AGL42, AT5G62165, T22726; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MADS |
| Length: | 210 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 77-170 K-box region |
| Sequence: (in bold interface residues) | 1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60 61 DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180 181 TDQQQEKYKVIDLNLEVETDLFIGLPNRNC |
| Interface Residues: | 3, 4, 15, 18, 19, 23 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A |
| Binding Motifs: | M0488 / MA1201.1 CATCATy |
| Publications: | Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed] |
| Related annotations: | PaperBLAST |
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