Transcription Factor

Accessions: P56693 (JASPAR 2024)
Names: SOX10_HUMAN
Organisms: Homo sapiens, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 466
Pfam Domains: 12-94 Sox developmental protein N terminal
104-172 HMG (high mobility group) box
105-167 Domain of unknown function (DUF1898)
Sequence:
(in bold interface residues)
1 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD 60
61 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR 120
121 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN 180
181 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT 240
241 PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY 300
301 LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET 360
361 AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG 420
421 LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
Interface Residues: 106, 109, 111, 112, 115, 119, 130, 131, 132, 135, 173, 177
3D-footprint Homologues: 6jrp_D, 1qrv_A, 3u2b_C, 7m5w_A, 2gzk_A, 4s2q_D, 1j5n_A, 2lef_A, 4y60_C, 1o4x_B, 3f27_D, 1hry_A
Binding Motifs: MA0442.1 CwTTGT
MA0442.2 rraACAAAGvm
MA0442.3 ACAAAG
Binding Sites: MA0442.1.1
MA0442.1.10
MA0442.1.11
MA0442.1.12
MA0442.1.13
MA0442.1.14
MA0442.1.15
MA0442.1.16 / MA0442.1.17
MA0442.1.18
MA0442.1.19
MA0442.1.2
MA0442.1.20
MA0442.1.3 / MA0442.1.9
MA0442.1.4
MA0442.1.5
MA0442.1.6
MA0442.1.7
MA0442.1.8
MA0442.2.1
MA0442.2.10
MA0442.2.11
MA0442.2.12
MA0442.2.13
MA0442.2.14
MA0442.2.15
MA0442.2.16
MA0442.2.17
MA0442.2.18
MA0442.2.19
MA0442.2.2
MA0442.2.20
MA0442.2.3
MA0442.2.4
MA0442.2.5
MA0442.2.6
MA0442.2.7
MA0442.2.8
MA0442.2.9
MA0442.3.1
MA0442.3.10 / MA0442.3.11 / MA0442.3.12 / MA0442.3.13 / MA0442.3.14 / MA0442.3.17 / MA0442.3.18 / MA0442.3.19 / MA0442.3.20 / MA0442.3.3 / MA0442.3.6 / MA0442.3.7 / MA0442.3.8
MA0442.3.15
MA0442.3.16
MA0442.3.2 / MA0442.3.5
MA0442.3.4
MA0442.3.9
Publications: Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.