Transcription Factor
| Accessions: | Q9SWG3 (JASPAR 2024), T17156 (AthalianaCistrome v4_May2016) |
| Names: | FAR1_ARATH, AT4G15090, FAR1, T17156; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:FAR1 |
| Length: | 827 |
| Pfam Domains: | 66-154 FAR1 DNA-binding domain 289-370 MULE transposase domain 563-590 SWIM zinc finger |
| Sequence: (in bold interface residues) | 1 MDLQENLVSDAGDDHMVDIVVEPHSNRDIGIVDEFNIGGDVGFSGDLDLEPRNGIDFDTH 60 61 EAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSRRSTV 120 121 KKTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAV 180 181 SERTKKMYVEMSRQSGGYKNIGSLLQTDVSSQVDKGRYLALEEGDSQVLLEYFKRIKKEN 240 241 PKFFYAIDLNEDQRLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHH 300 301 SQPMLLGCALVADESMETFVWLIKTWLRAMGGRAPKVILTDQDKFLMSAVSELLPNTRHC 360 361 FALWHVLEKIPEYFSHVMKRHENFLLKFNKCIFRSWTDDEFDMRWWKMVSQFGLENDEWL 420 421 LWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVILQNR 480 481 YEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDEN 540 541 MATFRVQDCEKDDDFLVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYI 600 601 LKRWTKDAKSGVLAGEGADQIQTRVQRYNDLCSRATELSEEGCVSEENYNIALRTLVETL 660 661 KNCVDMNNARNNITESNSQLNNGTHEEENQVMAGVKATKKKTVYRKRKGQQEASQMLESQ 720 721 QSLQPMETISSEAMDMNGYYGPQQNVQGLLNLMEPPHEGYYVDQRTIQGLGQLNSIAPAQ 780 781 DSFFTNQQAMSGMVGQIDFRPPPNFTYTLQEEHLSSAQLPGSSSRQL |
| Interface Residues: | 428, 430, 575, 671 |
| 3D-footprint Homologues: | 3twm_A, 4h5q_B, 6ppu_A |
| Binding Motifs: | M0371 / MA1382.1 ayyyCACGCGCytyy M0372 mrGCGCGTGrrrtwmacksss MA1382.2 yCACGCGCy |
| Binding Sites: | MA1382.1.1 MA1382.1.10 MA1382.1.11 MA1382.1.12 MA1382.1.13 / MA1382.1.15 MA1382.1.14 MA1382.1.16 MA1382.1.17 MA1382.1.18 MA1382.1.19 MA1382.1.2 / MA1382.1.3 MA1382.1.20 MA1382.1.4 MA1382.1.5 / MA1382.1.6 MA1382.1.7 MA1382.1.8 MA1382.1.9 MA1382.2.1 MA1382.2.10 MA1382.2.11 MA1382.2.12 MA1382.2.13 / MA1382.2.15 MA1382.2.14 MA1382.2.16 MA1382.2.17 MA1382.2.18 MA1382.2.19 MA1382.2.2 / MA1382.2.3 MA1382.2.20 MA1382.2.4 MA1382.2.5 / MA1382.2.6 MA1382.2.7 MA1382.2.8 MA1382.2.9 |
| Publications: | Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318:1302-5 (2007). [Pubmed] |
| Related annotations: | PaperBLAST |
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