Transcription Factor

Accessions: Q24255 (JASPAR 2024)
Names: BARH1_DROME, Homeobox protein B-H1, Homeobox protein BarH1
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q24255
Length: 544
Pfam Domains: 300-356 Homeobox domain
Sequence:
(in bold interface residues)
1 MKDSMSILTQTPSEPNAAHPQLHHHLSTLQQQHHQHHLHYGLQPPAVAHSIHSTTTMSSG 60
61 GSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQLHHHNNNNNSGSSGGSSPAH 120
121 SNNNNNINGDNCEASNVAGVGVLPSALHHPQPHPPTHPHTHPHALMHPHGKLGHFPPTAG 180
181 GNGLNVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGL 240
241 APPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQR 300
301 KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAV 360
361 GLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNIDIYYRQAAAAAAMQK 420
421 PLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSLSSYYQSAAAAASAANPGGPHPV 480
481 APPPSVGGGSPPSGLVKPIPAHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSDDED 540
541 QIQV
Interface Residues: 300, 301, 302, 303, 304, 341, 342, 344, 345, 348, 349, 352, 353, 356
3D-footprint Homologues: 2h1k_B, 1puf_A, 6a8r_A, 1fjl_B, 3cmy_A, 5zfz_A, 6fqp_B, 3d1n_M, 1ig7_A, 1jgg_B, 1mnm_C, 6m3d_C, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 2ld5_A, 6es3_K, 7q3o_C, 5hod_A, 3l1p_A, 1au7_A, 3a01_E, 2h8r_B, 5jlw_D, 1puf_B, 1b72_A, 4xrs_G, 2hdd_A, 7psx_B, 3rkq_B, 2r5y_A, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 1e3o_C, 7xrc_C, 1ic8_B, 1le8_A, 2xsd_C, 1le8_B, 6fqq_E, 4qtr_D, 8g87_X, 1k61_B, 1du0_A, 1o4x_A
Binding Motifs: MA0168.1 tTAAwyG
Binding Sites: MA0168.1.20
MA0168.1.1
MA0168.1.10
MA0168.1.11 / MA0168.1.18 / MA0168.1.3
MA0168.1.12
MA0168.1.13
MA0168.1.14 / MA0168.1.5
MA0168.1.15
MA0168.1.16
MA0168.1.17
MA0168.1.19
MA0168.1.2
MA0168.1.4
MA0168.1.6
MA0168.1.7
MA0168.1.8
MA0168.1.9
Publications: Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.