Transcription Factor
| Accessions: | ORA47 (ArabidopsisPBM 20140210), T000613_1.02 (CISBP 1.02), Q9S7L5 (JASPAR 2024) |
| Names: | ORA47, T000613_1.02;, ERF18_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, CISBP 1.02 2, JASPAR 2024 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | AP2/EREBP (DREB), experiment type:PBM, family:AP2 |
| Length: | 195 |
| Pfam Domains: | 19-69 AP2 domain |
| Sequence: (in bold interface residues) | 1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAF 60 61 DAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPG 120 121 SEIRPESPSTSASVATSTVDYDFSFLDLLPMNFGFDSFSDDFSGFSGGDRFTEILPIEDY 180 181 GGESLLDESLILWDF |
| Interface Residues: | 25, 27, 28, 29, 30, 31, 33, 35, 37, 40, 44, 46 |
| 3D-footprint Homologues: | 7wq5_A, 5wx9_A, 1gcc_A, 5i44_I, 7et4_D |
| Binding Motifs: | ORA47 crCCGACCAa ORA47_2 kGCGCCGmCt M0014_1.02 yrCCGwCca MA1048.1 rCCGACCA |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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