Transcription Factor
Accessions: | A8KA13 (JASPAR 2024) |
Names: | A8KA13_HUMAN, B-cell CLL/lymphoma 6, member B, BCL6B, cDNA FLJ16548 fis, clone PLACE7000410, highly similar to B-cell CLL/lymphoma 6 member B protein, cDNA FLJ77637, cDNA FLJ77701, highly similar to Homo sapiens B-cell CLL/lymphoma 6, member B (zinc finger protein, Zinc finger protein |
Organisms: | Homo sapiens |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | A8KA13 |
Length: | 480 |
Pfam Domains: | 28-134 BTB/POZ domain 329-351 C2H2-type zinc finger 329-351 Zinc finger, C2H2 type 343-367 Zinc-finger double domain 357-379 Zinc finger, C2H2 type 357-377 C2H2-type zinc finger 357-375 Zinc-finger of C2H2 type 371-395 Zinc-finger double domain 385-407 Zinc finger, C2H2 type 385-407 C2H2-type zinc finger 399-424 Zinc-finger double domain 413-435 Zinc finger, C2H2 type 413-435 C2H2-type zinc finger 428-451 Zinc-finger double domain |
Sequence: (in bold interface residues) | 1 MGSPAAPEGALGYVREFTRHSSDVLGNLNELRLRGILTDVTLLVGGQPLRAHKAVLIACS 60 61 GFFYSIFRGRAGVGVDVLSLPGGPEARGFAPLLDFMYTSRLRLSPATAPAVLAAATYLQM 120 121 EHVVQACHRFIQASYEPLGISLRPLEAEPPTPPTAPPPGSPRRSEGHPDPPTESRSCSQG 180 181 PPSPASPDPKACNWKKYKYIVLNSQASQAGSLVGERSSGQPCPQARLPSGDEASSSSSSS 240 241 SSSSSEEGPIPGPQSRLSPTAATVQFKCGAPASTPYLLTSQAQDTSGSPSERARPLPGSE 300 301 FFSCQNCEAVAGCSSGLDSLVPGDEDKPYKCQLCRSSFRYKGNLASHRTVHTGEKPYHCS 360 361 ICGARFNRPANLKTHSRIHSGEKPYKCETCGSRFVQVAHLRAHVLIHTGEKPYPCPTCGT 420 421 RFRHLQTLKSHVRIHTGEKPYHCDPCGLHFRHKSQLRLHLRQKHGAATNTKVHYHILGGP 480 |
Interface Residues: | 313, 315, 316, 319, 339, 340, 341, 342, 343, 345, 346, 348, 349, 350, 352, 357, 367, 368, 369, 370, 371, 373, 374, 378, 395, 396, 397, 398, 399, 401, 402, 403, 423, 424, 425, 426, 427, 428, 429, 430, 431, 433, 452, 453, 454, 455, 456, 457, 458 |
3D-footprint Homologues: | 7w1m_H, 5v3j_F, 7y3l_A, 7n5w_A, 8ssq_A, 5und_A, 2gli_A, 8ssu_A, 6ml4_A, 8gn3_A, 5kkq_D, 6wmi_A, 8h9h_G, 2i13_A, 7y3m_I, 5yel_A, 2jpa_A, 1ubd_C, 2kmk_A, 1tf3_A, 6jnm_A, 8cuc_F, 1g2f_F, 1tf6_A, 4x9j_A, 1llm_D, 6blw_A, 6u9q_A, 5ei9_F, 1mey_C, 5kl3_A, 1f2i_J, 5k5i_A, 7eyi_G, 2lt7_A, 6e94_A, 7ysf_A, 7txc_E, 2drp_D, 5yj3_D, 4m9v_C, 6a57_A, 3uk3_C, 2wbs_A, 5k5l_F |
Binding Motifs: | MA0731.1 TGCTTTCTAGGAATTmm |
Publications: | Hartatik T, Okada S, Okabe S, Arima M, Hatano M, Tokuhisa T. Binding of BAZF and Bc16 to STAT6-binding DNA sequences. Biochem Biophys Res Commun 284:26-32 (2001). [Pubmed] |
Related annotations: | PaperBLAST |
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