Transcription Factor
| Accessions: | A0A1D5NT38 (JASPAR 2024) |
| Names: | A0A1D5NT38_CHICK |
| Organisms: | Gallus gallus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 1520 |
| Pfam Domains: | 293-448 Rel homology domain (RHD) |
| Sequence: (in bold interface residues) | 1 MLRRTVLVGMKWTAVWCGELIKHKDCLCCSEGQGSESVYDLLPKELQLPPSRETSVASMS 60 61 QTSGGEAGSPPPAVVAADASSAPSSSSMGGACSSFTTSSSPTIYSTSVTDSKAMQVESCS 120 121 SAVGVSNRGVSEKQLTSNTVQQQQSTPKRHTVLYISPPPEDLLDNSRMSCQDEGCGLESE 180 181 QSCSMWMEDSPSNFSNMSTSSYNDNTEVPRKSRKRNPKQRPGIKRRDCEESNMDIFDADS 240 241 AKAPHYVLSQLSTDSKGNSKAGNGASESQKGAGGKKTPMLCGQYPTKSEGKELKIVVQPE 300 301 TQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRV 360 361 TGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIGIAGSKKKST 420 421 RARLVFRVNITRKDGSTLTLQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKN 480 481 FLKGTKVIFQENVSDENSWKAEAEIDMELFHQNHLIVKVPPYHDQRITSAVSVGIYVVTN 540 541 AGRSHDVQQFTYTPDTSGTLNVNVKKEISSPAQHCSFEEAIKATSCNLEKVNILPSALIT 600 601 PLMPSSMIKNEDVSPMEVSAEKRSPPVFKASKVVGPTQQTLESSMPGIPTSASHLPSENE 660 661 KQQQIQPKVYNPETLTTIQTQDITQPGSFSSVSTPGQLQNSDTLLQQAAQFQTRDSQTRE 720 721 VLQSDGTVVTLSQLTDASQQQQSTLPEPAQALQQQISSSIFSSASGVSQLQNTIQQLQAG 780 781 NFPTNTATGSNRNVDLVQQVLEAQQQLSSVLFSGSDSNEDVQDQLNADIFQQVSQIQNTV 840 841 NPGIFSSSDTAVHSRPENLLPGRGENVHPQPENTLSNQQQQQQQQQQQAMETSAAMVIGI 900 901 QQNICQAATQMQSDLFSSTTSGNGALQQSPVYQQASHIMSGLSTSEDMQMQCELFSSSPG 960 961 VSGSETNSTAQQQVSNNGPTIFQASSSADGEEASGQSKQMQSSVFQTMVQMQHSGESQSQ 1020 1021 VNLFSSTKNMMTVQPSGAQQQGGGLFQQGGEIMSIQPANFMQQSPHSQAQLFHSQNPIGD 1080 1081 TQNISQETQGSIFHSPNSIVHNQTNANSSDQLQPPMFHSQSTMGVLQSSSVPQDQQSANM 1140 1141 FLPQSSISNPATQEEQMSFFTNPSSISPLQAAANTEQPTSFQQQTQISHIQSSMLPQEQP 1200 1201 QTQPAQQGLFQPQVPLGSIQSSSIPQNQQGAIFQPQHSIVAIQSSPPSQEQPQQQQQNMM 1260 1261 FSNQNAMSTIASQKQNMIFNPNQNPVTNQEQQGQSIFHPQTNMAPINQEQQPMQFQSQTT 1320 1321 VSSLQNPGSSQAEAQQPAIFHNSPQIQLVQGSPSSQEQQVTLFISSASMSALQNSMSQQD 1380 1381 LQQSPMYSSQNSMAGMQGTASPPQQQASLFHNTAGGAINQLQNSPASSQQTSGIFLFGIQ 1440 1441 NNCSQLLPSGPAALPDELMAISQPGQPQSEGQAAVPALLSQQIPETSPLPSAMAPSQNIE 1500 1501 KIDDLLVSLQNQGNNMTGSF |
| Interface Residues: | 304, 306, 307, 309, 310, 313, 400, 417, 451, 453, 480, 541, 542 |
| 3D-footprint Homologues: | 2ram_A, 1imh_C, 7cli_B, 1p7h_L, 1a3q_A, 2o61_A, 1a66_A |
| Binding Motifs: | MA0606.1 atTTTCCAyw |
| Publications: | Badran B. M., Wolinsky S. M., Burny A., Willard-Gallo K. E. Identification of three NFAT binding motifs in the 5'-upstream region of the human CD3gamma gene that differentially bind NFATc1, NFATc2, and NF-kappa B p50.. J. Biol. Chem. 277:47136-48 (2002). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.