Transcription Factor

Accessions: AtMYB43 (AthaMYB 1.0)
Names: AtMYB43, Myb domain protein 43, MYB transcription factor, Putative transcription factor, Putative uncharacterized protein At5g16600
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9SPG7
Length: 328
Pfam Domains: 14-61 Myb-like DNA-binding domain
17-77 Myb-like DNA-binding domain
71-111 Myb-like DNA-binding domain
73-118 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGRQPCCDKVGLKKGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINY 60
61 LRPDLKRGLLSEYEEQKVINLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMG 120
121 IDPLTHKPLSEQEASQQAQGRKKSLVPHDDKNPKQDQQTKDEQEQHQLEQALEKNNTSVS 180
181 GDGFCIDEVPLLNPHEILIDISSSHHHHSNDDNVNINTSKFTSPSSSSSSTSSCISSVVP 240
241 GDEFSKFFDEMEILDLKWLSSDDSLGDDISKDGKFNNSTVDTMNLWDINDLSSLDMFMNE 300
301 HDDGFIGNGNGCSRMVLDQDSWTFDLL*
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 3osg_A, 2kdz_A, 7xur_A, 3zqc_A, 1mse_C, 5eyb_B, 6kks_A, 7c4r_A
Binding Motifs: AtMYB43_I awmAGTTr
AtMYB43_II rbTrGTTr
Binding Sites: AAAAGTTA
ACAAGTTA
AGGTTA
AGTAGTTA
AGTGGTTA
ATTAGTTG
GCTTGTTG
GTCAGTTA
GTTAGTTG
TACTGTTG
TAGTTA
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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