Transcription Factor
Accessions: | T082897_1.02 (CISBP 1.02), Q7RY86 (JASPAR 2024) |
Names: | NCU00019, T082897_1.02;, Q7RY86_NEUCR |
Organisms: | Neurospora crassa, Neurospora crassa OR74A |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:Forkhead |
Length: | 688 |
Pfam Domains: | 123-206 FHA domain 330-420 Fork head domain |
Sequence: (in bold interface residues) | 1 MSPSPPKHTASFNTADQHNLSDPVTGDSSPSRPSKRRKKDDDAPTDLADEADSSLVADQS 60 61 ALDMNDDDQVVARVIQYLEMPKNVQASKDHSNSIHESSQGVQAFAKIAANDWTYYIMSLN 120 121 VNIGRSSEPIQATTGQSQEEDPSKVVHIDLGPNKQVSRQHALIYFKSTEEQWWLRVKGRN 180 181 ALKVDGVPWKVGDEGPLRSGEVIEIGGMEMMFVLPADISALQIKRDYLERAGIVPPDSQV 240 241 SPRQARHPLPSAGESHAFQAVSPTSKAAPRNQGPQKALAPAPPDYRRGVTPPLNLPRPPM 300 301 HRPVHEGLAGPLVMTNNEVDLSLDENQHIKPQFSYAQMITQAIVNTEDQKLNLSGIYQFI 360 361 MNRYSYYRHQPAGGWQNSIRHNLSLNKSFEKVARSTDEPGKGMKWQIVADAREDMIRNAY 420 421 RGGRGGHRGTSNPASPSGLNYITQGPKDMAAKEPASSRKRKISPSDSPQPQPHPTLRDSQ 480 481 STPVRAAQRKPLPDKAEDGTEASPLSTIRKPATMSTLGIVEDTPASPTLGPSYLQEDGAS 540 541 LVTPAPNRVNPRLVPPSTAQRPSQHMPTSSPAPFWRYADISSTPLKPAQYDASPSKTHGN 600 601 LPSQSSSPPPPARSKSPAGSASPSRTTSRGATVGVEESPSPAEEEEDRAFDLTKGFQSIG 660 661 SYHAPVSRGKEVQPAGNGDVPSMAPLSS |
Interface Residues: | 327, 371, 374, 376, 377, 378, 380, 381, 382, 384, 385, 394, 401 |
3D-footprint Homologues: | 7yzb_A, 3l2c_A, 7vox_H, 2hdc_A, 7tdx_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 3qrf_G |
Binding Motifs: | M0743_1.02 atwGTAAAyAaa MA0929.1 atwGTAAAyAaa MA0929.2 GTAAAyA |
Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.