Transcription Factor

Accessions: ZNF16 (humanC2H2ZF-ChIP Feb2015), P17020 (JASPAR 2024)
Names: ENSG00000170631, P17020, ZNF16, Zinc finger protein 16, Zinc finger protein KOX9, ZNF16_HUMAN
Organisms: Homo sapiens
Libraries: humanC2H2ZF-ChIP Feb2015 1, JASPAR 2024 2
1 Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33:555-62 (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: TF family: C2H2 experiment: ChIP-seq/MEME/B1H-RC
Length: 682
Pfam Domains: 209-220 C2H2-type zinc finger
230-247 Zinc-finger double domain
237-254 Zinc finger, C2H2 type
239-247 C2H2-type zinc finger
257-274 Zinc-finger double domain
265-287 C2H2-type zinc finger
265-289 C2H2-type zinc finger
265-287 Zinc finger, C2H2 type
280-303 Zinc-finger double domain
293-315 C2H2-type zinc finger
293-315 Zinc finger, C2H2 type
295-317 C2H2-type zinc finger
307-331 Zinc-finger double domain
320-341 C2H2-type zinc finger
321-343 C2H2-type zinc finger
321-343 Zinc finger, C2H2 type
335-359 Zinc-finger double domain
349-371 C2H2-type zinc finger
349-371 C2H2-type zinc finger
349-371 Zinc finger, C2H2 type
363-387 Zinc-finger double domain
377-399 C2H2-type zinc finger
377-399 C2H2-type zinc finger
377-399 Zinc finger, C2H2 type
391-415 Zinc-finger double domain
404-427 C2H2-type zinc finger
405-427 C2H2-type zinc finger
405-427 Zinc finger, C2H2 type
419-443 Zinc-finger double domain
432-453 C2H2-type zinc finger
433-455 Zinc finger, C2H2 type
433-455 C2H2-type zinc finger
448-472 Zinc-finger double domain
460-480 C2H2-type zinc finger
461-483 C2H2-type zinc finger
461-483 Zinc finger, C2H2 type
476-500 Zinc-finger double domain
489-511 C2H2-type zinc finger
489-508 C2H2-type zinc finger
489-511 Zinc finger, C2H2 type
504-527 Zinc-finger double domain
517-539 C2H2-type zinc finger
517-539 C2H2-type zinc finger
517-539 Zinc finger, C2H2 type
532-555 Zinc-finger double domain
544-565 C2H2-type zinc finger
545-567 C2H2-type zinc finger
545-567 Zinc finger, C2H2 type
562-583 Zinc-finger double domain
572-595 C2H2-type zinc finger
573-595 C2H2-type zinc finger
573-595 Zinc finger, C2H2 type
588-611 Zinc-finger double domain
600-620 C2H2-type zinc finger
601-623 C2H2-type zinc finger
601-623 Zinc finger, C2H2 type
616-639 Zinc-finger double domain
628-649 C2H2-type zinc finger
629-651 C2H2-type zinc finger
629-651 Zinc finger, C2H2 type
645-667 Zinc-finger double domain
657-676 C2H2-type zinc finger
657-679 Zinc finger, C2H2 type
657-679 C2H2-type zinc finger
Sequence:
(in bold interface residues)
1 MPSLRTRREEAEMELSVPGPSPWTPAAQARVRDAPAVTHPGSAACGTPCCSDTELEAICP 60
61 HYQQPDCDTRTEDKEFLHKEDIHEDLESQAEISENYAGDVSQVPELGDLCDDVSERDWGV 120
121 PEGRRLPQSLSQEGDFTPAAMGLLRGPLGEKDLDCNGFDSRFSLSPNLMACQEIPTEERP 180
181 HPYDMGGQSFQHSVDLTGHEGVPTAESPLICNECGKTFQGNPDLIQRQIVHTGEASFMCD 240
241 DCGKTFSQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPYMCNECGK 300
301 AFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRR 360
361 SSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNL 420
421 IKHHRVHTGEKPYKCSDCGKAFSQSSSLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQ 480
481 IIHTGEKPYRCSVCGKAFSHSSALIQHQGVHTGDKPYACHECGKTFGRSSNLILHQRVHT 540
541 GEKPYECTECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSSNLIHHQKVHTGEKP 600
601 YTCVECGKGFSQSSHLIQHQIIHTGERPYKCSECGKAFSQRSVLIQHQRIHTGVKPYDCA 660
661 ACGKAFSQRSKLIKHQLIHTRE
Interface Residues: 304, 305, 306, 307, 310, 311, 332, 334, 335, 336, 337, 338, 339, 340, 341, 344, 359, 360, 361, 362, 363, 366, 377, 387, 388, 389, 390, 391, 393, 394, 415, 416, 417, 418, 419, 420, 422, 423, 425, 443, 444, 445, 446, 447, 449, 450, 454, 471, 472, 473, 474, 475, 477, 478, 499, 500, 501, 502, 503, 505, 506, 527, 528, 530, 531, 534, 556, 557, 558, 559, 561, 562, 584, 585, 586, 587, 590, 596, 610, 612, 614, 615, 618, 622, 639, 640, 641, 642, 643, 644, 646, 667, 668, 670, 671, 674
3D-footprint Homologues: 5ei9_F, 2i13_A, 4m9v_C, 1mey_C, 7txc_E, 6blw_A, 2jpa_A, 3uk3_C, 1tf3_A, 5kl3_A, 1f2i_J, 5k5i_A, 1g2f_F, 1tf6_A, 4x9j_A, 6u9q_A, 1ubd_C, 2kmk_A, 7n5w_A, 6wmi_A, 5yj3_D, 7w1m_H, 2gli_A, 1llm_D, 8h9h_G, 6e94_A, 6ml4_A, 5v3j_F, 2wbs_A, 8cuc_F, 8ssq_A, 5und_A, 8ssu_A, 5kkq_D, 2lt7_A, 7y3m_I, 7y3l_A, 7ysf_A, 6jnm_A, 2drp_D, 7eyi_G, 6a57_A, 5k5l_F, 5yel_A, 8gn3_A
Binding Motifs: ZNF16_ChIP CCytCyaTGGCTCCC
MA1654.1 AvTrGGGAGCCATgGArGGtTyt
MA1654.2 AvTrGGGAGCCATgGArGGtT
Binding Sites: MA1654.1.1
MA1654.1.10
MA1654.1.11
MA1654.1.12 / MA1654.1.8
MA1654.1.13 / MA1654.1.9
MA1654.1.10 / MA1654.1.14
MA1654.1.11 / MA1654.1.15
MA1654.1.12 / MA1654.1.16
MA1654.1.13 / MA1654.1.17
MA1654.1.14 / MA1654.1.18
MA1654.1.15 / MA1654.1.19
MA1654.1.2
MA1654.1.16 / MA1654.1.20
MA1654.1.2 / MA1654.1.3
MA1654.1.3 / MA1654.1.4
MA1654.1.4 / MA1654.1.5
MA1654.1.5 / MA1654.1.6
MA1654.1.6 / MA1654.1.7
MA1654.1.7 / MA1654.1.8
MA1654.1.9
MA1654.1.17
MA1654.1.18
MA1654.1.19
MA1654.1.20
MA1654.2.1
MA1654.2.10
MA1654.2.11
MA1654.2.12
MA1654.2.13
MA1654.2.14
MA1654.2.15
MA1654.2.16
MA1654.2.17
MA1654.2.18 / MA1654.2.4
MA1654.2.19
MA1654.2.2
MA1654.2.20
MA1654.2.3
MA1654.2.5
MA1654.2.6
MA1654.2.7
MA1654.2.8
MA1654.2.9
Publications: Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Multiparameter functional diversity of human C2H2 zinc finger proteins. Genome Res 26:1742-1752 (2016). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.