Transcription Factor
Accessions: | ZNF16 (humanC2H2ZF-ChIP Feb2015), P17020 (JASPAR 2024) |
Names: | ENSG00000170631, P17020, ZNF16, Zinc finger protein 16, Zinc finger protein KOX9, ZNF16_HUMAN |
Organisms: | Homo sapiens |
Libraries: | humanC2H2ZF-ChIP Feb2015 1, JASPAR 2024 2 1 Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33:555-62 (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | TF family: C2H2 experiment: ChIP-seq/MEME/B1H-RC |
Length: | 682 |
Pfam Domains: | 209-220 C2H2-type zinc finger 230-247 Zinc-finger double domain 237-254 Zinc finger, C2H2 type 239-247 C2H2-type zinc finger 257-274 Zinc-finger double domain 265-287 C2H2-type zinc finger 265-289 C2H2-type zinc finger 265-287 Zinc finger, C2H2 type 280-303 Zinc-finger double domain 293-315 C2H2-type zinc finger 293-315 Zinc finger, C2H2 type 295-317 C2H2-type zinc finger 307-331 Zinc-finger double domain 320-341 C2H2-type zinc finger 321-343 C2H2-type zinc finger 321-343 Zinc finger, C2H2 type 335-359 Zinc-finger double domain 349-371 C2H2-type zinc finger 349-371 C2H2-type zinc finger 349-371 Zinc finger, C2H2 type 363-387 Zinc-finger double domain 377-399 C2H2-type zinc finger 377-399 C2H2-type zinc finger 377-399 Zinc finger, C2H2 type 391-415 Zinc-finger double domain 404-427 C2H2-type zinc finger 405-427 C2H2-type zinc finger 405-427 Zinc finger, C2H2 type 419-443 Zinc-finger double domain 432-453 C2H2-type zinc finger 433-455 Zinc finger, C2H2 type 433-455 C2H2-type zinc finger 448-472 Zinc-finger double domain 460-480 C2H2-type zinc finger 461-483 C2H2-type zinc finger 461-483 Zinc finger, C2H2 type 476-500 Zinc-finger double domain 489-511 C2H2-type zinc finger 489-508 C2H2-type zinc finger 489-511 Zinc finger, C2H2 type 504-527 Zinc-finger double domain 517-539 C2H2-type zinc finger 517-539 C2H2-type zinc finger 517-539 Zinc finger, C2H2 type 532-555 Zinc-finger double domain 544-565 C2H2-type zinc finger 545-567 C2H2-type zinc finger 545-567 Zinc finger, C2H2 type 562-583 Zinc-finger double domain 572-595 C2H2-type zinc finger 573-595 C2H2-type zinc finger 573-595 Zinc finger, C2H2 type 588-611 Zinc-finger double domain 600-620 C2H2-type zinc finger 601-623 C2H2-type zinc finger 601-623 Zinc finger, C2H2 type 616-639 Zinc-finger double domain 628-649 C2H2-type zinc finger 629-651 C2H2-type zinc finger 629-651 Zinc finger, C2H2 type 645-667 Zinc-finger double domain 657-676 C2H2-type zinc finger 657-679 Zinc finger, C2H2 type 657-679 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 MPSLRTRREEAEMELSVPGPSPWTPAAQARVRDAPAVTHPGSAACGTPCCSDTELEAICP 60 61 HYQQPDCDTRTEDKEFLHKEDIHEDLESQAEISENYAGDVSQVPELGDLCDDVSERDWGV 120 121 PEGRRLPQSLSQEGDFTPAAMGLLRGPLGEKDLDCNGFDSRFSLSPNLMACQEIPTEERP 180 181 HPYDMGGQSFQHSVDLTGHEGVPTAESPLICNECGKTFQGNPDLIQRQIVHTGEASFMCD 240 241 DCGKTFSQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPYMCNECGK 300 301 AFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRR 360 361 SSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNL 420 421 IKHHRVHTGEKPYKCSDCGKAFSQSSSLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQ 480 481 IIHTGEKPYRCSVCGKAFSHSSALIQHQGVHTGDKPYACHECGKTFGRSSNLILHQRVHT 540 541 GEKPYECTECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSSNLIHHQKVHTGEKP 600 601 YTCVECGKGFSQSSHLIQHQIIHTGERPYKCSECGKAFSQRSVLIQHQRIHTGVKPYDCA 660 661 ACGKAFSQRSKLIKHQLIHTRE |
Interface Residues: | 304, 305, 306, 307, 310, 311, 332, 334, 335, 336, 337, 338, 339, 340, 341, 344, 359, 360, 361, 362, 363, 366, 377, 387, 388, 389, 390, 391, 393, 394, 415, 416, 417, 418, 419, 420, 422, 423, 425, 443, 444, 445, 446, 447, 449, 450, 454, 471, 472, 473, 474, 475, 477, 478, 499, 500, 501, 502, 503, 505, 506, 527, 528, 530, 531, 534, 556, 557, 558, 559, 561, 562, 584, 585, 586, 587, 590, 596, 610, 612, 614, 615, 618, 622, 639, 640, 641, 642, 643, 644, 646, 667, 668, 670, 671, 674 |
3D-footprint Homologues: | 5ei9_F, 2i13_A, 4m9v_C, 1mey_C, 7txc_E, 6blw_A, 2jpa_A, 3uk3_C, 1tf3_A, 5kl3_A, 1f2i_J, 5k5i_A, 1g2f_F, 1tf6_A, 4x9j_A, 6u9q_A, 1ubd_C, 2kmk_A, 7n5w_A, 6wmi_A, 5yj3_D, 7w1m_H, 2gli_A, 1llm_D, 8h9h_G, 6e94_A, 6ml4_A, 5v3j_F, 2wbs_A, 8cuc_F, 8ssq_A, 5und_A, 8ssu_A, 5kkq_D, 2lt7_A, 7y3m_I, 7y3l_A, 7ysf_A, 6jnm_A, 2drp_D, 7eyi_G, 6a57_A, 5k5l_F, 5yel_A, 8gn3_A |
Binding Motifs: | ZNF16_ChIP CCytCyaTGGCTCCC MA1654.1 AvTrGGGAGCCATgGArGGtTyt MA1654.2 AvTrGGGAGCCATgGArGGtT |
Binding Sites: | MA1654.1.1 MA1654.1.10 MA1654.1.11 MA1654.1.12 / MA1654.1.8 MA1654.1.13 / MA1654.1.9 MA1654.1.10 / MA1654.1.14 MA1654.1.11 / MA1654.1.15 MA1654.1.12 / MA1654.1.16 MA1654.1.13 / MA1654.1.17 MA1654.1.14 / MA1654.1.18 MA1654.1.15 / MA1654.1.19 MA1654.1.2 MA1654.1.16 / MA1654.1.20 MA1654.1.2 / MA1654.1.3 MA1654.1.3 / MA1654.1.4 MA1654.1.4 / MA1654.1.5 MA1654.1.5 / MA1654.1.6 MA1654.1.6 / MA1654.1.7 MA1654.1.7 / MA1654.1.8 MA1654.1.9 MA1654.1.17 MA1654.1.18 MA1654.1.19 MA1654.1.20 MA1654.2.1 MA1654.2.10 MA1654.2.11 MA1654.2.12 MA1654.2.13 MA1654.2.14 MA1654.2.15 MA1654.2.16 MA1654.2.17 MA1654.2.18 / MA1654.2.4 MA1654.2.19 MA1654.2.2 MA1654.2.20 MA1654.2.3 MA1654.2.5 MA1654.2.6 MA1654.2.7 MA1654.2.8 MA1654.2.9 |
Publications: | Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Multiparameter functional diversity of human C2H2 zinc finger proteins. Genome Res 26:1742-1752 (2016). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.