Transcription Factor

						

			
Accessions: T090204_1.02 (CISBP 1.02), Q9FX31 (JASPAR 2024), T00762 (AthalianaCistrome v4_May2016)

			
Names: EDT1, T090204_1.02;, HD-ZIP protein HDG11, HDG11_ARATH, Homeobox-leucine zipper protein HDG11, Homeodomain GLABRA 2-like protein 11, Homeodomain transcription factor HDG11, Protein ENHANCED DROUGHT TOLERANCE 1, Protein HOMEODOMAIN GLABROUS 11, AT1G73360, T00762;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Homeodomain, ecotype:Col-0, experiment type: DAP-seq, family:Homeobox
Length: 722
Pfam Domains:     33-88 Homeobox domain
  237-457 START domain
Sequence: 
(in bold interface residues)		   1 MSFVVGVGGSGSGSGGDGGGSHHHDGSETDRKKKRYHRHTAQQIQRLESSFKECPHPDEK   60
  61 QRNQLSRELGLAPRQIKFWFQNRRTQLKAQHERADNSALKAENDKIRCENIAIREALKHA  120
 121 ICPNCGGPPVSEDPYFDEQKLRIENAHLREELERMSTIASKYMGRPISQLSTLHPMHISP  180
 181 LDLSMTSLTGCGPFGHGPSLDFDLLPGSSMAVGPNNNLQSQPNLAISDMDKPIMTGIALT  240
 241 AMEELLRLLQTNEPLWTRTDGCRDILNLGSYENVFPRSSNRGKNQNFRVEASRSSGIVFM  300
 301 NAMALVDMFMDCVKWTELFPSIIAASKTLAVISSGMGGTHEGALHLLYEEMEVLSPLVAT  360
 361 REFCELRYCQQTEQGSWIVVNVSYDLPQFVSHSQSYRFPSGCLIQDMPNGYSKVTWVEHI  420
 421 ETEEKELVHELYREIIHRGIAFGADRWVTTLQRMCERFASLSVPASSSRDLGGVILSPEG  480
 481 KRSMMRLAQRMISNYCLSVSRSNNTRSTVVSELNEVGIRVTAHKSPEPNGTVLCAATTFW  540
 541 LPNSPQNVFNFLKDERTRPQWDVLSNGNAVQEVAHISNGSHPGNCISVLRGSNATHSNNM  600
 601 LILQESSTDSSGAFVVYSPVDLAALNIAMSGEDPSYIPLLSSGFTISPDGNGSNSEQGGA  660
 661 STSSGRASASGSLITVGFQIMVSNLPTAKLNMESVETVNNLIGTTVHQIKTALSGPTAST  720
 721 TA
Interface Residues: 30, 32, 33, 34, 35, 36, 37, 38, 74, 75, 77, 78, 81, 82, 85, 86, 89
3D-footprint Homologues: 1puf_A, 6fqp_B, 2h1k_B, 2lkx_A, 5zjt_E, 1puf_B, 3d1n_M, 1nk2_P, 2ld5_A, 7psx_B, 1mnm_C, 3rkq_B, 7q3o_C, 6es3_K, 1k61_B, 3l1p_A, 2r5y_A, 5jlw_D, 1le8_A, 1ig7_A, 1e3o_C, 2xsd_C, 7xrc_C, 1au7_A, 4j19_B, 8g87_X, 1b72_A, 5flv_I, 3lnq_A, 4qtr_D, 3cmy_A, 2hdd_A, 6fqq_E, 1du0_A, 5hod_A, 1jgg_B, 6a8r_A, 4xrm_B, 6m3d_C, 4cyc_A, 1zq3_P, 4xrs_G, 1o4x_A, 6wig_A, 1fjl_B, 5zfz_A, 3a01_E, 2hos_A
Binding Motifs: M0842_1.02 ymwTwAATGc
MA0990.1 ymwTwAATGc
M0435 kCATTwAwTry
MA0990.2 mwTwAATGc
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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