Transcription Factor
| Accessions: | Sna (SMILE-seq 1.0) |
| Names: | Sna, TOLL_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | SMILE-seq 1.0 1 1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
| Uniprot: | P08953 |
| Length: | 389 |
| Pfam Domains: | 245-269 C2H2-type zinc finger 279-302 C2H2-type zinc finger 280-302 C2H2-type zinc finger 280-302 Zinc finger, C2H2 type 294-317 Zinc-finger double domain 307-328 C2H2-type zinc finger 307-328 Zinc finger, C2H2 type 307-324 C2H2-type zinc finger 321-344 Zinc-finger double domain 334-356 C2H2-type zinc finger 334-356 C2H2-type zinc finger 334-356 Zinc finger, C2H2 type 348-373 Zinc-finger double domain 362-385 C2H2-type zinc finger 362-380 C2H2-type zinc finger 362-385 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGRDEETQDYQQP 60 61 EPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTEIHMRGLTAGTTGYTTATPTT 120 121 INPFQSAFVMAAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQQMTPPSSPGSDL 180 181 ETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHA 240 241 KNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIR 300 301 THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVK 360 361 KYACQVCHKSFSRMSLLNKHSSSNCTITI |
| Interface Residues: | 232, 234, 235, 255, 256, 258, 259, 262, 290, 291, 292, 293, 294, 296, 297, 299, 300, 303, 316, 317, 318, 319, 320, 322, 323, 324, 344, 345, 346, 347, 348, 349, 350, 351, 352, 355, 372, 373, 374, 375, 376, 377, 378, 379, 383 |
| 3D-footprint Homologues: | 2i13_A, 7w1m_H, 5v3j_F, 1ubd_C, 6jnm_A, 5ei9_F, 5kl3_A, 8ssq_A, 8ssu_A, 6ml4_A, 5kkq_D, 7eyi_G, 7ysf_A, 6wmi_A, 6a57_A, 2jpa_A, 3uk3_C, 1tf3_A, 8cuc_F, 7y3l_A, 7n5w_A, 6u9q_A, 1mey_C, 1f2i_J, 5k5i_A, 2kmk_A, 5und_A, 2gli_A, 1g2f_F, 1tf6_A, 4x9j_A, 1llm_D, 6blw_A, 2wbs_A, 8h9h_G, 4m9v_C, 6e94_A, 2lt7_A, 7y3m_I, 5yel_A, 7txc_E, 2drp_D, 5yj3_D, 5k5l_F, 8gn3_A |
| Binding Motifs: | Sna kbrACAGGTGyaa |
| Publications: | Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.