Transcription Factor
| Accessions: | T154048_1.02 (CISBP 1.02), Q9FLX8 (JASPAR 2024), T21742 (AthalianaCistrome v4_May2016) |
| Names: | T154048_1.02;, WRKY27, Probable WRKY transcription factor 27, WRK27_ARATH, WRKY DNA-binding protein 27, AT5G52830, T21742; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:WRKY, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 348 |
| Pfam Domains: | 165-223 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MSSEDWDLFAVVRSCSSSVSTTNSCAGHEDDIGNCKQQQDPPPPPLFQASSSCNELQDSC 60 61 KPFLPVTTTTTTTWSPPPLLPPPKASSPSPNILLKQEQVLLESQDQKPPLSVRVFPPSTS 120 121 SSVFVFRGQRDQLLQQQSQPPLRSRKRKNQQKRTICHVTQENLSSDLWAWRKYGQKPIKG 180 181 SPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTHRNSLAGSTRNKSQ 240 241 PVNPVPKPDTSPLSDTVKEEIHLSPTTPLKGNDDVQETNGDEDMVGQEVNMEEEEEEEEV 300 301 EEDDEEEEDDDDVDDLLIPNLAVRDRDDLFFAGSFPSWSAGSAGDGGG |
| Interface Residues: | 171, 172, 173, 175, 176, 187 |
| 3D-footprint Homologues: | 6j4e_B, 6j4f_F, 6j4g_B, 6ir8_A, 7z0u_A |
| Binding Motifs: | M1700_1.02 drGTCaamg M0822 / MA1318.1 akmGTTGACTTTt M0793 aAAAGTCAACkwt MA1318.2 mGTTGACTTTt |
| Binding Sites: | MA1318.1.19 MA1318.1.15 MA1318.1.14 MA1318.1.4 MA1318.1.20 MA1318.1.18 MA1318.1.11 MA1318.1.12 MA1318.1.5 MA1318.1.2 / MA1318.1.7 MA1318.1.13 MA1318.1.8 MA1318.1.16 / MA1318.1.17 MA1318.1.6 MA1318.1.1 MA1318.1.10 MA1318.1.3 MA1318.1.9 MA1318.2.13 MA1318.2.14 MA1318.2.9 MA1318.2.18 MA1318.2.5 MA1318.2.8 MA1318.2.6 MA1318.2.1 MA1318.2.10 MA1318.2.11 MA1318.2.12 MA1318.2.15 MA1318.2.16 MA1318.2.17 MA1318.2.19 MA1318.2.2 / MA1318.2.7 MA1318.2.20 MA1318.2.3 MA1318.2.4 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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