Transcription Factor
| Accessions: | T13400 (AthalianaCistrome v4_May2016), A4VCM0 (JASPAR 2024) |
| Names: | ANAC045, AT3G03200, T13400;, NAC45_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 479 |
| Pfam Domains: | 6-133 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MAPVSLPPGFRFHPTDEELITYYLKRKINGLEIELEVIAEVDLYKCEPWDLPGKSLLPSK 60 61 DQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVYYRGRAPH 120 121 GIRTGWVMHEYRLDETECEPSAYGMQDAYALCRVFKKIVIEAKPRDQHRSYVHAMSNVSG 180 181 NCSSSFDTCSDLEISSTTHQVQNTFQPRFGNERFNSNAISNEDWSQYYGSSYRPFPTPYK 240 241 VNTEIECSMLQHNIYLPPLRVENSAFSDSDFFTSMTHNNDHGVFDDFTFAASNSNHNNSV 300 301 GDQVIHVGNYDEQLITSNRHMNQTGYIKEQKIRSSLDNTDEDPGFHGNNTNDNIDIDDFL 360 361 SFDIYNEDNVNQIEDNEDVNTNETLDSSGFEVVEEETRFNNQMLISTYQTTKILYHQVVP 420 421 CHTLKVHVNPISHNVEERTLFIEEDKDSWLQRAEKITKTKLTLFSLMAQQYYKCLAIFF |
| Interface Residues: | 74, 79, 81, 90, 92, 94, 114, 118, 119, 120, 123 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0641 CkTGwrgwwsAAGyAA M0668 CkTGyrgwasAAGyAA MA2048.1 / UN0375.1 mwsAAGCAAccww MA2048.2 sAAGCAAc |
| Binding Sites: | MA2048.2.4 UN0375.1.10 UN0375.1.12 MA2048.1.11 / UN0375.1.16 MA2048.1.15 MA2048.1.2 / UN0375.1.2 MA2048.1.5 / UN0375.1.5 UN0375.1.6 MA2048.1.6 / UN0375.1.7 MA2048.1.1 / UN0375.1.1 MA2048.1.8 / UN0375.1.11 MA2048.1.9 / UN0375.1.13 UN0375.1.14 MA2048.1.10 / UN0375.1.15 MA2048.1.12 / UN0375.1.17 MA2048.1.13 / UN0375.1.18 UN0375.1.19 MA2048.1.14 / UN0375.1.20 MA2048.1.3 / UN0375.1.3 MA2048.1.4 / UN0375.1.4 UN0375.1.8 MA2048.1.7 / UN0375.1.9 MA2048.1.17 MA2048.1.16 MA2048.1.18 MA2048.1.19 MA2048.1.20 MA2048.2.7 MA2048.2.10 / MA2048.2.16 / MA2048.2.2 / MA2048.2.20 / MA2048.2.5 / MA2048.2.6 MA2048.2.12 / MA2048.2.17 MA2048.2.15 / MA2048.2.19 MA2048.2.9 MA2048.2.1 / MA2048.2.8 MA2048.2.11 / MA2048.2.14 MA2048.2.13 MA2048.2.18 MA2048.2.3 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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