Transcription Factor

						

			
Accessions: Q9ZUL3 (JASPAR 2024), T07803 (AthalianaCistrome v4_May2016)

			
Names: ID1-like zinc finger protein 2, IDD5_ARATH, Protein indeterminate-domain 5, chloroplastic, AT2G02070, IDD5, T07803;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2
Length: 602
Pfam Domains:    81-103 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MAASSSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPPHHQAPLPPLEAPPQKKKRNQPRT   60
  61 PNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRK  120
 121 VYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCG  180
 181 TKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNA  240
 241 SSMILGLSHMGAPQNLDHQPGDVLRLGSGGGGGGAASRSSSDLIAANASGYFMQEQNPSF  300
 301 HDQQDHHHHHQQGFLAGNNNIKQSPMSFQQNLMQFSHDNHNSAPSNVFNLSFLSGNNGVT  360
 361 SATSNPNAAAAAAVSSGNLMISNHYDGENAVGGGGEGSTGLFPNNLMSSADRISSGSVPS  420
 421 LFSSSMQSPNSAPHMSATALLQKAAQMGSTSSNNNNGSNTNNNNNASSILRSFGSGIYGE  480
 481 NESNLQDLMNSFSNPGATGNVNGVDSPFGSYGGVNKGLSADKQSMTRDFLGVGQIVKSMS  540
 541 GSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTGGGPASTSPPYGIHHA  600
 601 SF
Interface Residues: 63, 66, 67, 70, 81, 92, 93, 94, 95, 97, 98, 100, 101, 107, 108, 114, 136, 137, 138, 139, 140, 141, 142, 143, 145, 146, 167, 168, 169, 170, 171, 173, 174, 194, 195, 196, 197, 198, 200, 201, 202, 203
3D-footprint Homologues: 8cuc_F, 2i13_A, 2kmk_A, 5ei9_F, 5und_A, 7ysf_A, 2gli_A, 5v3j_F, 5kkq_D, 5yel_A, 4x9j_A, 6u9q_A, 6blw_A, 1tf3_A, 6wmi_A, 6e94_A, 1tf6_A, 2jpa_A, 5k5i_A, 1g2f_F, 6ml4_A, 5kl3_A, 1mey_C, 2lt7_A, 7n5w_A, 1ubd_C, 8h9h_G, 2drp_D, 1llm_D, 7eyi_G, 7txc_E
Binding Motifs: M0335 / MA1370.1 wTTTTGTCGTTTwsyg
M0309 wwtTTTGTCkTTTTsyk
MA1370.2 TTTTGTCGTTTwsy
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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