Transcription Factor

Accessions: 5jh0_D (3D-footprint 20231221)
Names: ABF2_YEAST, ARS-binding factor 2, mitochondrial
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q02486
Length: 157
Pfam Domains: 19-81 Domain of unknown function (DUF1898)
19-86 HMG (high mobility group) box
92-157 HMG (high mobility group) box
Sequence:
(in bold interface residues)
1 HHKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNL 60
61 EADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQL 120
121 DLMKIIGDKWQSLDQSIKDKYIQEYKKAIQEYNARYP
Interface Residues: 21, 24, 26, 27, 30, 34, 45, 46, 47, 50, 81, 84, 94, 97, 99, 100, 103, 107, 118, 119, 120, 123
3D-footprint Homologues: 4s2q_D, 1qrv_A, 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 1hry_A, 1ckt_A, 3tmm_A, 2lef_A, 3tq6_B
Binding Motifs: 5jh0_AD AATAnnnnnnnATATAATAnnnAATAnnnnnnnnTATaAT
5jh0_D ATATaATAnnnAATA
Publications: Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed]
Related annotations: PaperBLAST

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