Transcription Factor
| Accessions: | G5EE86 (JASPAR 2024) |
| Names: | Abnormal thermotaxis protein 3, LIM/homeobox protein ttx-3, TTX3_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | G5EE86 |
| Length: | 409 |
| Pfam Domains: | 110-166 LIM domain 171-227 LIM domain 293-349 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MYFQSLSADPLDSVNTTTDFNQLAQLLLMLTNSSSKETIATHVVTNSVPSAFQFDWSSHF 60 61 KEEYDLVEKLNSPQYTNLTSISPSSSTDSNNLILRQIQIPKIEPALLNQCCLCTFAIVDK 120 121 EISVVDGKYYHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAKRYQKCCRKCEIPLNR 180 181 EDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLCEEAAV 240 241 ATVPAVVAPPPPPPTTTTAPPPAAPEQPPREASTEAEASTDEDGNGSGSQRSKRMRTSFK 300 301 HHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVLQVWFQNARAKYRRELHDGGRSSSP 360 361 LCVSAPLASMDMNPPLSSSSSGHSTDGYQLNTPPLSSEIYSPNSNYTHL |
| Interface Residues: | 292, 293, 294, 295, 296, 334, 335, 337, 338, 341, 342, 345, 346, 349 |
| 3D-footprint Homologues: | 3d1n_M, 3cmy_A, 5zfz_A, 1fjl_B, 2h1k_B, 1ig7_A, 1puf_A, 6a8r_A, 1jgg_B, 1zq3_P, 6m3d_C, 1nk2_P, 3lnq_A, 2lkx_A, 7q3o_C, 6es3_K, 2ld5_A, 2hdd_A, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 4xrs_G, 2hos_A, 4cyc_A, 5flv_I, 3l1p_A, 1b72_A, 5zjt_E, 3a01_E, 7psx_B, 5hod_A, 1e3o_C, 7xrc_C, 2xsd_C, 1le8_B, 4qtr_D, 1du0_A, 4xrm_B |
| Binding Motifs: | MA0263.1 ATTRGyTTmGTTAr |
| Publications: | Wenick A.S, Hobert O. Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. Developmental cell 6:757-70 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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