Transcription Factor
| Accessions: | HSFB2A (ArabidopsisPBM 20140210), T21361 (AthalianaCistrome v4_May2016), Q9SCW4 (JASPAR 2024) |
| Names: | AT-HSFB2A, AT5G62020, HSF6, T21361;, AtHsf-22, AtHsfB2a, Heat shock factor protein 6, Heat shock transcription factor 6, Heat stress transcription factor B-2a, HFB2A_ARATH, HSF 6, HSTF 6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | HSF, ecotype:Col-0, experiment type: DAP-seq, family:HSF |
| Length: | 299 |
| Pfam Domains: | 24-115 HSF-type DNA-binding |
| Sequence: (in bold interface residues) | 1 MNSPPVDAMITGESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAK 60 61 DLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQ 120 121 TVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENE 180 181 KLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPGGSSSQPMEFLPAKRFSE 240 241 MEIEEEEEASPRLFGVPIGLKRTRSEGVQVKTTAVVGENSDEETPWLRHYNRTNQRVCN |
| Interface Residues: | 68, 69, 74, 76, 77, 78, 80, 81, 112 |
| 3D-footprint Homologues: | 5hdn_C, 5d5v_B, 5d5w_B, 3hts_B, 7dci_A, 6rrd_B |
| Binding Motifs: | HSFB2A vGAAssTTCy HSFB2A_2 yTTCyrGAAv M0454 / MA1665.1 GAAgcTTCyAGA MA1665.2 ytrGAAGsTTCyar MA1665.3 rGAAGsTTCy |
| Binding Sites: | MA1665.2.1 MA1665.2.10 MA1665.2.11 MA1665.2.12 MA1665.2.13 MA1665.2.14 MA1665.2.15 MA1665.2.16 MA1665.2.17 MA1665.2.18 MA1665.2.19 MA1665.2.2 MA1665.2.20 MA1665.2.3 MA1665.2.4 MA1665.2.5 MA1665.2.6 MA1665.2.7 MA1665.2.8 MA1665.2.9 MA1665.3.1 MA1665.3.10 / MA1665.3.11 MA1665.3.12 MA1665.3.13 MA1665.3.14 MA1665.3.15 MA1665.3.16 MA1665.3.17 / MA1665.3.3 MA1665.3.18 MA1665.3.19 / MA1665.3.9 MA1665.3.2 / MA1665.3.7 MA1665.3.20 / MA1665.3.5 / MA1665.3.6 / MA1665.3.8 MA1665.3.4 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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