Transcription Factor
| Accessions: | T14137 (AthalianaCistrome v4_May2016), Q9LSI4 (JASPAR 2024), NAC (EEADannot 2023-12-22) |
| Names: | AT3G12910, T14137;, NAC, No Apical Meristem, Q9LSI4_ARATH, NAM, No apical meristem domain-containing transcriptional regulator |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2, EEADannot 2023-12-22 3 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 303 |
| Pfam Domains: | 22-150 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MEKMIEPRDNTRESEDEDALKLPGFRFHPTDEELVGYYLSKKVLLKKTSKIDEIVSQIDI 60 61 YKFDPWDLPRSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDGSNKA 120 121 VIGLKKTLVYYLGSAGKGNKTDWMMHEFRLPTANDTIPGGPTHSNPTPTSLLHAEVWTLC 180 181 RIFKRTVSSRKYTPDWRELANGKRVKQQQSNYQEAYINFGDNESSSSTNVMNVREGKGNY 240 241 ERSVFQLQQTPYQHQNQPILMDTTHVDSFQHFSNDNIHHETYETWPDELRSVVEFAFPPS 300 301 FLS |
| Interface Residues: | 88, 93, 95, 104, 106, 108, 131, 135, 136, 137, 140 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0711 yGsCGKrradwygmCGk UN0405.1 / UN0845.1 yGsCGKrradwygmCGk EEAD0003 TCTCCksCAGs |
| Binding Sites: | NAC_1 NAC_2 |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.