Transcription Factor
| Accessions: | Q9ZPY0 (JASPAR 2024), T10897 (AthalianaCistrome v4_May2016) |
| Names: | AtDOF2.5, Dof affecting germination 2, Dof zinc finger protein DOF2.5, DOF25_ARATH, AT2G46590, DAG2, T10897; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Uniprot: | Q9ZPY0 |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 369 |
| Pfam Domains: | 76-137 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MDATKWTQGFQEMMNVKPMEQIMIPNNNTHQPNTTSNARPNTILTSNGVSTAGATVSGVS 60 61 NNNNNTAVVAERKARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSL 120 121 RNVPVGGSSRKNKRSSSSSSSNILQTIPSSLPDLNPPILFSNQIHNKSKGSSQDLNLLSF 180 181 PVMQDQHHHHVHMSQFLQMPKMEGNGNITHQQQPSSSSSVYGSSSSPVSALELLRTGVNV 240 241 SSRSGINSSFMPSGSMMDSNTVLYTSSGFPTMVDYKPSNLSFSTDHQGLGHNSNNRSEAL 300 301 HSDHHQQGRVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMF 360 361 STTGGGSSW |
| Interface Residues: | 77, 88, 89, 90, 95 |
| 3D-footprint Homologues: | 6o19_A, 5omv_A |
| Binding Motifs: | MA0977.1 AwAARGTg M0260 / MA1271.1 sAAAAAGkdra M0266 cAAAAAGkkaaww |
| Binding Sites: | MA1271.1.1 MA1271.1.10 MA1271.1.11 MA1271.1.12 MA1271.1.13 MA1271.1.14 MA1271.1.15 MA1271.1.16 MA1271.1.17 MA1271.1.18 MA1271.1.19 MA1271.1.2 MA1271.1.20 MA1271.1.3 MA1271.1.4 MA1271.1.5 MA1271.1.6 MA1271.1.7 MA1271.1.8 MA1271.1.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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