Transcription Factor

Accessions: Q9LFU3 (JASPAR 2024), T26338 (AthalianaCistrome v4_May2016), bZIP3 (EEADannot 2023-12-22)
Names: At5g15830, Basic leucine-zipper 3, BZIP DNA-binding protein-like, Putative bZIP transcription factor AtbZip3, Q9LFU3_ARATH, bZIP3, T26338;, Q9LFU3_ARATH;At5g15830
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:bZIP
Length: 186
Pfam Domains: 72-121 Basic region leucine zipper
74-124 bZIP transcription factor
Sequence:
(in bold interface residues)
1 MQPNYDSSSLNNMQQQDYFNLNNYYNNLNPSTNNNNLNILQYPQIQELNLQSPVSNNSTT 60
61 SDDATEEIFVINERKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQ 120
121 VSDNNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDELDQDFSSITDDP 180
181 RTHHPS
Interface Residues: 78, 81, 82, 83, 85, 86, 89, 90
3D-footprint Homologues: 4eot_A, 1gd2_G, 2dgc_A
Binding Motifs: M0194 / MA1340.1 dwwGmTGACGTGGCa
EEAD0132 GmTGACGTGGC
EEAD0133 kmCACGTGkCa
MA1340.2 wGmTGACGTGGCa
Binding Sites: MA1340.1.1
MA1340.1.9
MA1340.1.11
MA1340.1.13
MA1340.1.16
MA1340.1.20
MA1340.1.3
MA1340.1.4
MA1340.1.2
MA1340.1.5
MA1340.1.8
MA1340.1.7
MA1340.1.6
MA1340.1.10
MA1340.1.12
MA1340.1.14
MA1340.1.15
MA1340.1.17
MA1340.1.18
MA1340.1.19
MA1340.2.13
MA1340.2.20
MA1340.2.16
MA1340.2.10
MA1340.2.9
MA1340.2.1
MA1340.2.11
MA1340.2.3
MA1340.2.2
MA1340.2.8
MA1340.2.4
MA1340.2.5
MA1340.2.7
MA1340.2.6
MA1340.2.12
MA1340.2.14
MA1340.2.15
MA1340.2.17
MA1340.2.18
MA1340.2.19
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.